This docker image is part of the eBioKit 2017 project.
This docker image extends and distributes the following software:
- Basic Local Alignment Search Tool
- BLAST is Public Domain software.
- Citation
Basic local alignment search tool. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. J Mol Biol. 1990 Oct 5;215(3):403-10. Link. BLAST+: architecture and applications. Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421. Link.
- Docker image.
- Licensed under GNU AGPL version 3..
- Citation
Priyam A, Woodcroft BJ, Rai V, Munagala A, Moghul I, Ter F, Gibbins MA, Moon H, Leonard G, Rumpf W & Wurm Y. 2015. Sequenceserver: A modern graphical user interface for custom BLAST databases. biorxiv doi: 10.1101/033142. Link.
The eBioKit is a system running multiple open source web services on an Apple Mac-mini where all databases are stored locally. This reduces the need for a fast internet connection while giving the users an opportunity to incorporate their data sets in widely used web services.
The eBioKit is developed by the SLU Global Bioinformatics Centre (SGBC), an academic research and educational initiative aimed to build a long-term successful bioinformatics infrastructure facility that serves the Swedish University for Agricultural Sciences (SLU) and life science research communities worldwide.
Find more information at http://ebiokit.eu and at the SGBC website.
Contact [email protected]
