Bugfix #2958 main_v11.1 BAGSS SEDI CI #2960
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* Add user execute permissions to compile script - main_v11.1 (#2740) * Changing -j to "-j 5" as the recommended value for MAKE_ARGS * Per #2761, update the MET development environment after upgrading seneca to debian bookworm. * Per #2761, define runtime python version for testing rather than using the default version which no longer exists in /usr/local * Per #2761, fix setting ci-skip-all * Per #2761, patching test_util.R to use the -C command line option for ncdiff. * #2652 Added find_var_by_standard_name and separated common codes to find_xy_vars * #2757 The SonarQube token and URL are replaced with the pre-defined strings, SONAR_TOKEN_VALUE and SONAR_SERVER_URL * #2757 Get the email list from the environment variable MET_CRON_EMAIL_LIST__MET (or MET_CRON_EMAIL_LIST) * #2757 The SonarQube token and URL are replaced by using the environment variable SONAR_TOKEN_VALUE and SONAR_SERVER_URL * Bugfix #2760 main_v11.1 --enable-python (#2767) * #2755 Added a header count and checking header count instead of using header id (hid) * Bugfix #2782 main_v11.1 MASSDEN (#2784) * Per #2782, update the multiple matching records warning message to include the table number for each record. * Per #2782, update read_grib2_record_list() to parse the level values and aerosol information correctly for table 4.48. * Per #2782 tweak variable naming convention. * Removing ${MAKE_ARGS} in some locations Removing ${MAKE_ARGS} from "make install" and "make test" for MET. Removing "met" prefix from met.configure.log because we really need config.log for any detail. It is confusing to have met.configure.log when that does not contain useful information. * Adding -lnetcdf -lm to configure_lib_args for NetCDF-CXX * Feature #2796 main_v11.1 gha node20 (#2798) * Per #2796, update versions of actions to fix the node 16 to 20 warning message. * Per #2796, port fixes for artifact name handling over from the develop branch to the main_v11.1 testing workflow. Also add the compilation_options.yml workflow since the workflows are being updated. * Create 11.1.0_casper * Recent changes to branch protection rules for the main_vX.Y branches have broken the logic of the update_truth.yml GHA workflow. Instead of submitting a PR to merge main_vX.Y into main_vX.Y-ref directly, use an intermediate update_truth_for_main_vX.Y branch. * Update the pull request template to include a question about expected impacts to existing METplus Use Cases. * Bugfix #2833 main_v11.1 azimuth (#2834) * Per #2833, fix n-1 bug when defining the azimuth delta for range/azimuth grids. * Per #2833, port fixes over from the bugfix_2833_develop_azimuth branch over to the main_v11.1 branch. --------- Co-authored-by: MET Tools Test Account <[email protected]> * Feature #2379 main_v11.1 sonarqube GHA (#2848) * Per #2379, migrating largely the same changes for #2379 into the main_v11.1 branch. The difference is that --enable-all is not used since that is not a valid configuration option for MET version 11.1.0. * Hotfix related to #2379. The sonar.newCode.referenceBranch and sonar.branch.name cannot be set to the same string! Only add the newCode definition when they differ. * Feature #2379 main_v11.1 sonarqube updates (#2851) * Feature #2379 main_v11.1 single_sq_project (#2866) * Bugfix 2867 point2grid qc flag main v11.1 (#2874) * #2867 Added point2grid_GOES_16_ADP_Enterprise_high and changed qc flags for ADP * #2867 Added get_nc_att_values_ * #2867 Added get_nc_att_values * #2867 Get the ADP QC flag values from the varibale attributes (support GOES16 Enterprise allgorithm) and apply them for QC Flags. Adjusted the ADP QC flags based on the variable QC values --------- Co-authored-by: Howard Soh <[email protected]> * Bugfix 2867 point2grid qc flag main v11.1 (#2878) * #2867 Added point2grid_GOES_16_ADP_Enterprise_high and changed qc flags for ADP * #2867 Added get_nc_att_values_ * #2867 Added get_nc_att_values * #2867 Get the ADP QC flag values from the varibale attributes (support GOES16 Enterprise allgorithm) and apply them for QC Flags. Adjusted the ADP QC flags based on the variable QC values * #2867 Added adjusted confidnece counts * #2867 Corretced indent * #2867 Corretced indent --------- Co-authored-by: Howard Soh <[email protected]> * #2884 No filtering by QC flags without -qc option (#2885) Co-authored-by: Howard Soh <[email protected]> * Per #2659, making updates as proposed at the 20240516 MET Eng. Mtg. (#2896) * Bugfix #2897 main_v11.1 python_valid_time (#2898) * Per #2897, fix typos in 3 log messages. Also fix the bug in storing the valid time strings. The time string in vld_array should exactly correspond to the numeric unixtime values in vld_num_array. Therefore they need to be updated inside the same if block. The bug is that we were storing only the unique unixtime values but storing ALL of the valid time string, not just the unique ones. * Per #2897, don’t waste time searching, just set vld_odd to n-1 * #2687 Saved the PBL input into the vector (#2903) * #2904 Changed R path to R-4.4.0 (#2909) Co-authored-by: Howard Soh <[email protected]> * Bugfix #2856 main_v11.1 ens_climo (#2917) * Per #2856, reinitialize the climo cdf info pointer. * Per #2856, update the testing.yml workflow dispatch option to let the comparison branch be manually defined. * Revert "Per #2856, reinitialize the climo cdf info pointer." This reverts commit 99b6bb3. * Per #2856, reinitialize the climo cdf info pointer. * Revert "Per #2856, update the testing.yml workflow dispatch option to let the comparison branch be manually defined." This reverts commit 0ae224f. * Per #2856, update the truth_data_version and input_data_version if main_vX.Y is not present in the branch name. * Update set_job_controls.sh * Update set_job_controls.sh * Per #2856, update logic for counting the maximum number of PCT, PRC, PJC, and PSTD lines. Need to multiply by the number of climo cdf bins. * Per #2856, add more error checking to avoid writing nan to .stat output files * Bugfix #2841 main_v11.1 tang_rad_winds (#2920) * Per #2841, unrelated, just removing a spurious character from a log message. * Per #2841, work in progress. Mostly just modifying whitespace and log messages so far * Per #2841, running tc_rmw with only UGRD input causes the tool to hang. Adding break statements to prevent the hang. * Per #2841, add new has_pressure_level() utility function and update tc_rmw to use it to deteremine whether or not the pressure dimension should be written the output rather than basing that off the number of levels being > 1. * Per #1849, fix to radial and tangential winds. * Per #2841, just changing a code comment about the longitude swap * Per #2841, update variable names for consistency and understanding. * Per #2841, the substantive bug fixed here is how we index into the U and V data in wind_ne_to_rt() using i_rev instead of i. Also, update the variable names for consistency and clarity.. * Per #2841, patch apparent copy/paste bug in tcrmw_grid.cc code. * Per #2841, only changing whitespace. * Per #2841, update logic in EarthRotation::set_tcrmw() to change the rotation of TCRMW grids from pointing north to pointing east. * Per #2841, fix warning message * Replace tab with spaces * Per #2841, correct the units for the azimuth netcdf output variable * Per #2841, reverse the x dimension of the rotated latlon grid to effectively switch from counterclockwise rotation to clockwise. * Feature #2855 v11.1.1 (#2923) * Per #2855, add v11.1.1 release notes. * Per #2841, fix bold formatting of release notes. * Update conf.py with actual 11.1.1 release date * bugfix #2936 point2grid for tripolar GFS input (#2945) * #2936 Support 1D lat/lon values * #2936 Change obs_type to TYPE_NCCF if FileType_NcCF is given from the config file --------- Co-authored-by: Howard Soh <[email protected]> * Bugfix #2958 main_v11.1 BAGSS SEDI CI (#2960) --------- Co-authored-by: George McCabe <[email protected]> Co-authored-by: Julie Prestopnik <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: metplus-bot <[email protected]>
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jprestop
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* added new use case that was missing * Bugfix #2279 main_v5.1 - buoy station file from 2022 (#2281) * Fix typo in pull_request_template.md * added notes to make it clear that upgrade instructions are not needed if upgrading from 5.0 to 5.1 * New issue template: Update Truth (#2332) Co-authored-by: John Halley Gotway <[email protected]> (cherry picked from commit 44335f3) * add GitHub Actions workflow that is used to create Docker images that hold the conda environment used for the automated tests -- adding this to the default main_v5.1 branch so that it will become available to run for other branches as a workflow_dispatch workflow * add argument to workflow dispatch event so that MET DockerHub repo used for tests can be easily overridden to test changes in a MET PR before merging * Feature dtcenter/MET#2796 main_v5.1 GHA Node20 deprecation warnings (#2474) * per dtcenter/MET#2796, update versions of actions to prevent deprecated node warnings in GHA runs - main_v5.1 * fix ReadTheDocs requirements to include pillow which is a dependency of sphinx-gallery: see https://blog.readthedocs.com/defaulting-latest-build-tools/ for more info on why this was necessary * install python packages via apk instead of pip to prevent GHA failures that were fixed in develop but not in main_v5.1 * per dtcenter/MET#2796, fix error log merging for main_v5.1 same as develop * Bump pillow from 10.0.1 to 10.2.0 in /docs (#2477) Bumps [pillow](https://github.com/python-pillow/Pillow) from 10.0.1 to 10.2.0. - [Release notes](https://github.com/python-pillow/Pillow/releases) - [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst) - [Commits](python-pillow/Pillow@10.0.1...10.2.0) --- updated-dependencies: - dependency-name: pillow dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Create 5.1.0_casper * Update update_truth.md Fix typo in the update_truth issue template. * Update update_truth.md Clarify wording on the update_truth issue template. * Feature #2537 main_v5.1 sonarqube_gha (#2542) * Per #2537, add SonarQube workflow for METplus * Per #2537, update nightly build email list. * Per #2537, fix cut/paste error configure_sonarqube.sh * Per #2537, exclude test code from code coverage statistics. * update link to METplus Components Python Requirements table in PR template * update pillow version based on recommendation from dependabot: https://github.com/dtcenter/METplus/security/dependabot/5 * Fix main_v5.1 GHA - disk space and METviewer version (#2561) * added more commands to free up disk space as suggested in https://github.com/apache/flink/blob/master/tools/azure-pipelines/free_disk_space.sh, ci-run-all-cases * update location of METviewer docker-compose.yml file that moved from PR dtcenter/METviewer#525 * turn on use cases to test * use main_v5.1 tag of METviewer on DockerHub * turn off use case groups after confirming that they now run successfully * Feature #2537 main_v5.1 single_sq_project (#2559) * Feature 2346 main v5.1 update templates (#2588) * Per #2346, modifying issue templates * Per #2346, modifying the pull request template * Per #2346, modifying entries based on suggestions by @georgemccabe * Feature 2346 main v5.1 update templates (#2595) * Per #2346, modifying issue templates * Per #2346, modifying the pull request template * Per #2346, modifying entries based on suggestions by @georgemccabe * Per 2346, making updates based on feedback at last MET Eng. Meeting * fix broken link * Bump certifi from 2023.7.22 to 2024.7.4 (#2632) Bumps [certifi](https://github.com/certifi/python-certifi) from 2023.7.22 to 2024.7.4. - [Commits](certifi/python-certifi@2023.07.22...2024.07.04) --- updated-dependencies: - dependency-name: certifi dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * main_v5.1 - Enhance update truth data workflow to create a uniquely named branch... (#2678) * Enhance update truth data workflow to create a uniquely named branch to update *-ref branches and commit/append to a log file that tracks the reasons for updating the truth data. This is done to ensure that the *-ref branch testing workflow run that actually updates the truth data is always run even if there are no other changes to the METplus branch since the last update, e.g. when a change to another component like MET warrants the truth data update * git add change log file in case it doesn't already exist * changed logic to no longer push changes to develop/main_vX.Y, but instead merge changes from -ref into the update branch * retain update truth history file from *-ref * prevent failure when changelog does not exist in -ref branch * added entry to update truth change log: main_v5.1 dtcenter/MET#2960 --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: George McCabe <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Julie Prestopnik <[email protected]> Co-authored-by: metplus-bot <[email protected]>
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* Add user execute permissions to compile script - main_v11.1 (#2740) * Changing -j to "-j 5" as the recommended value for MAKE_ARGS * Per #2761, update the MET development environment after upgrading seneca to debian bookworm. * Per #2761, define runtime python version for testing rather than using the default version which no longer exists in /usr/local * Per #2761, fix setting ci-skip-all * Per #2761, patching test_util.R to use the -C command line option for ncdiff. * #2652 Added find_var_by_standard_name and separated common codes to find_xy_vars * #2757 The SonarQube token and URL are replaced with the pre-defined strings, SONAR_TOKEN_VALUE and SONAR_SERVER_URL * #2757 Get the email list from the environment variable MET_CRON_EMAIL_LIST__MET (or MET_CRON_EMAIL_LIST) * #2757 The SonarQube token and URL are replaced by using the environment variable SONAR_TOKEN_VALUE and SONAR_SERVER_URL * Bugfix #2760 main_v11.1 --enable-python (#2767) * #2755 Added a header count and checking header count instead of using header id (hid) * Bugfix #2782 main_v11.1 MASSDEN (#2784) * Per #2782, update the multiple matching records warning message to include the table number for each record. * Per #2782, update read_grib2_record_list() to parse the level values and aerosol information correctly for table 4.48. * Per #2782 tweak variable naming convention. * Removing ${MAKE_ARGS} in some locations Removing ${MAKE_ARGS} from "make install" and "make test" for MET. Removing "met" prefix from met.configure.log because we really need config.log for any detail. It is confusing to have met.configure.log when that does not contain useful information. * Adding -lnetcdf -lm to configure_lib_args for NetCDF-CXX * Feature #2796 main_v11.1 gha node20 (#2798) * Per #2796, update versions of actions to fix the node 16 to 20 warning message. * Per #2796, port fixes for artifact name handling over from the develop branch to the main_v11.1 testing workflow. Also add the compilation_options.yml workflow since the workflows are being updated. * Create 11.1.0_casper * Recent changes to branch protection rules for the main_vX.Y branches have broken the logic of the update_truth.yml GHA workflow. Instead of submitting a PR to merge main_vX.Y into main_vX.Y-ref directly, use an intermediate update_truth_for_main_vX.Y branch. * Update the pull request template to include a question about expected impacts to existing METplus Use Cases. * Bugfix #2833 main_v11.1 azimuth (#2834) * Per #2833, fix n-1 bug when defining the azimuth delta for range/azimuth grids. * Per #2833, port fixes over from the bugfix_2833_develop_azimuth branch over to the main_v11.1 branch. --------- Co-authored-by: MET Tools Test Account <[email protected]> * Feature #2379 main_v11.1 sonarqube GHA (#2848) * Per #2379, migrating largely the same changes for #2379 into the main_v11.1 branch. The difference is that --enable-all is not used since that is not a valid configuration option for MET version 11.1.0. * Hotfix related to #2379. The sonar.newCode.referenceBranch and sonar.branch.name cannot be set to the same string! Only add the newCode definition when they differ. * Feature #2379 main_v11.1 sonarqube updates (#2851) * Feature #2379 main_v11.1 single_sq_project (#2866) * Bugfix 2867 point2grid qc flag main v11.1 (#2874) * #2867 Added point2grid_GOES_16_ADP_Enterprise_high and changed qc flags for ADP * #2867 Added get_nc_att_values_ * #2867 Added get_nc_att_values * #2867 Get the ADP QC flag values from the varibale attributes (support GOES16 Enterprise allgorithm) and apply them for QC Flags. Adjusted the ADP QC flags based on the variable QC values --------- Co-authored-by: Howard Soh <[email protected]> * Bugfix 2867 point2grid qc flag main v11.1 (#2878) * #2867 Added point2grid_GOES_16_ADP_Enterprise_high and changed qc flags for ADP * #2867 Added get_nc_att_values_ * #2867 Added get_nc_att_values * #2867 Get the ADP QC flag values from the varibale attributes (support GOES16 Enterprise allgorithm) and apply them for QC Flags. Adjusted the ADP QC flags based on the variable QC values * #2867 Added adjusted confidnece counts * #2867 Corretced indent * #2867 Corretced indent --------- Co-authored-by: Howard Soh <[email protected]> * #2884 No filtering by QC flags without -qc option (#2885) Co-authored-by: Howard Soh <[email protected]> * Per #2659, making updates as proposed at the 20240516 MET Eng. Mtg. (#2896) * Bugfix #2897 main_v11.1 python_valid_time (#2898) * Per #2897, fix typos in 3 log messages. Also fix the bug in storing the valid time strings. The time string in vld_array should exactly correspond to the numeric unixtime values in vld_num_array. Therefore they need to be updated inside the same if block. The bug is that we were storing only the unique unixtime values but storing ALL of the valid time string, not just the unique ones. * Per #2897, don’t waste time searching, just set vld_odd to n-1 * #2687 Saved the PBL input into the vector (#2903) * #2904 Changed R path to R-4.4.0 (#2909) Co-authored-by: Howard Soh <[email protected]> * Bugfix #2856 main_v11.1 ens_climo (#2917) * Per #2856, reinitialize the climo cdf info pointer. * Per #2856, update the testing.yml workflow dispatch option to let the comparison branch be manually defined. * Revert "Per #2856, reinitialize the climo cdf info pointer." This reverts commit 99b6bb3. * Per #2856, reinitialize the climo cdf info pointer. * Revert "Per #2856, update the testing.yml workflow dispatch option to let the comparison branch be manually defined." This reverts commit 0ae224f. * Per #2856, update the truth_data_version and input_data_version if main_vX.Y is not present in the branch name. * Update set_job_controls.sh * Update set_job_controls.sh * Per #2856, update logic for counting the maximum number of PCT, PRC, PJC, and PSTD lines. Need to multiply by the number of climo cdf bins. * Per #2856, add more error checking to avoid writing nan to .stat output files * Bugfix #2841 main_v11.1 tang_rad_winds (#2920) * Per #2841, unrelated, just removing a spurious character from a log message. * Per #2841, work in progress. Mostly just modifying whitespace and log messages so far * Per #2841, running tc_rmw with only UGRD input causes the tool to hang. Adding break statements to prevent the hang. * Per #2841, add new has_pressure_level() utility function and update tc_rmw to use it to deteremine whether or not the pressure dimension should be written the output rather than basing that off the number of levels being > 1. * Per #1849, fix to radial and tangential winds. * Per #2841, just changing a code comment about the longitude swap * Per #2841, update variable names for consistency and understanding. * Per #2841, the substantive bug fixed here is how we index into the U and V data in wind_ne_to_rt() using i_rev instead of i. Also, update the variable names for consistency and clarity.. * Per #2841, patch apparent copy/paste bug in tcrmw_grid.cc code. * Per #2841, only changing whitespace. * Per #2841, update logic in EarthRotation::set_tcrmw() to change the rotation of TCRMW grids from pointing north to pointing east. * Per #2841, fix warning message * Replace tab with spaces * Per #2841, correct the units for the azimuth netcdf output variable * Per #2841, reverse the x dimension of the rotated latlon grid to effectively switch from counterclockwise rotation to clockwise. * Feature #2855 v11.1.1 (#2923) * Per #2855, add v11.1.1 release notes. * Per #2841, fix bold formatting of release notes. * Update conf.py with actual 11.1.1 release date * bugfix #2936 point2grid for tripolar GFS input (#2945) * #2936 Support 1D lat/lon values * #2936 Change obs_type to TYPE_NCCF if FileType_NcCF is given from the config file --------- Co-authored-by: Howard Soh <[email protected]> * Bugfix #2958 main_v11.1 BAGSS SEDI CI (#2960) * Bugfix #2958 main_v11.1 ORSS (#2972) Co-authored-by: MET Tools Test Account <[email protected]> --------- Co-authored-by: George McCabe <[email protected]> Co-authored-by: Julie Prestopnik <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: metplus-bot <[email protected]>
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Sep 26, 2024
* Add user execute permissions to compile script - main_v11.1 (#2740) * Changing -j to "-j 5" as the recommended value for MAKE_ARGS * Per #2761, update the MET development environment after upgrading seneca to debian bookworm. * Per #2761, define runtime python version for testing rather than using the default version which no longer exists in /usr/local * Per #2761, fix setting ci-skip-all * Per #2761, patching test_util.R to use the -C command line option for ncdiff. * #2652 Added find_var_by_standard_name and separated common codes to find_xy_vars * #2757 The SonarQube token and URL are replaced with the pre-defined strings, SONAR_TOKEN_VALUE and SONAR_SERVER_URL * #2757 Get the email list from the environment variable MET_CRON_EMAIL_LIST__MET (or MET_CRON_EMAIL_LIST) * #2757 The SonarQube token and URL are replaced by using the environment variable SONAR_TOKEN_VALUE and SONAR_SERVER_URL * Bugfix #2760 main_v11.1 --enable-python (#2767) * #2755 Added a header count and checking header count instead of using header id (hid) * Bugfix #2782 main_v11.1 MASSDEN (#2784) * Per #2782, update the multiple matching records warning message to include the table number for each record. * Per #2782, update read_grib2_record_list() to parse the level values and aerosol information correctly for table 4.48. * Per #2782 tweak variable naming convention. * Removing ${MAKE_ARGS} in some locations Removing ${MAKE_ARGS} from "make install" and "make test" for MET. Removing "met" prefix from met.configure.log because we really need config.log for any detail. It is confusing to have met.configure.log when that does not contain useful information. * Adding -lnetcdf -lm to configure_lib_args for NetCDF-CXX * Feature #2796 main_v11.1 gha node20 (#2798) * Per #2796, update versions of actions to fix the node 16 to 20 warning message. * Per #2796, port fixes for artifact name handling over from the develop branch to the main_v11.1 testing workflow. Also add the compilation_options.yml workflow since the workflows are being updated. * Create 11.1.0_casper * Recent changes to branch protection rules for the main_vX.Y branches have broken the logic of the update_truth.yml GHA workflow. Instead of submitting a PR to merge main_vX.Y into main_vX.Y-ref directly, use an intermediate update_truth_for_main_vX.Y branch. * Update the pull request template to include a question about expected impacts to existing METplus Use Cases. * Bugfix #2833 main_v11.1 azimuth (#2834) * Per #2833, fix n-1 bug when defining the azimuth delta for range/azimuth grids. * Per #2833, port fixes over from the bugfix_2833_develop_azimuth branch over to the main_v11.1 branch. --------- Co-authored-by: MET Tools Test Account <[email protected]> * Feature #2379 main_v11.1 sonarqube GHA (#2848) * Per #2379, migrating largely the same changes for #2379 into the main_v11.1 branch. The difference is that --enable-all is not used since that is not a valid configuration option for MET version 11.1.0. * Hotfix related to #2379. The sonar.newCode.referenceBranch and sonar.branch.name cannot be set to the same string! Only add the newCode definition when they differ. * Feature #2379 main_v11.1 sonarqube updates (#2851) * Feature #2379 main_v11.1 single_sq_project (#2866) * Bugfix 2867 point2grid qc flag main v11.1 (#2874) * #2867 Added point2grid_GOES_16_ADP_Enterprise_high and changed qc flags for ADP * #2867 Added get_nc_att_values_ * #2867 Added get_nc_att_values * #2867 Get the ADP QC flag values from the varibale attributes (support GOES16 Enterprise allgorithm) and apply them for QC Flags. Adjusted the ADP QC flags based on the variable QC values --------- Co-authored-by: Howard Soh <[email protected]> * Bugfix 2867 point2grid qc flag main v11.1 (#2878) * #2867 Added point2grid_GOES_16_ADP_Enterprise_high and changed qc flags for ADP * #2867 Added get_nc_att_values_ * #2867 Added get_nc_att_values * #2867 Get the ADP QC flag values from the varibale attributes (support GOES16 Enterprise allgorithm) and apply them for QC Flags. Adjusted the ADP QC flags based on the variable QC values * #2867 Added adjusted confidnece counts * #2867 Corretced indent * #2867 Corretced indent --------- Co-authored-by: Howard Soh <[email protected]> * #2884 No filtering by QC flags without -qc option (#2885) Co-authored-by: Howard Soh <[email protected]> * Per #2659, making updates as proposed at the 20240516 MET Eng. Mtg. (#2896) * Bugfix #2897 main_v11.1 python_valid_time (#2898) * Per #2897, fix typos in 3 log messages. Also fix the bug in storing the valid time strings. The time string in vld_array should exactly correspond to the numeric unixtime values in vld_num_array. Therefore they need to be updated inside the same if block. The bug is that we were storing only the unique unixtime values but storing ALL of the valid time string, not just the unique ones. * Per #2897, don’t waste time searching, just set vld_odd to n-1 * #2687 Saved the PBL input into the vector (#2903) * #2904 Changed R path to R-4.4.0 (#2909) Co-authored-by: Howard Soh <[email protected]> * Bugfix #2856 main_v11.1 ens_climo (#2917) * Per #2856, reinitialize the climo cdf info pointer. * Per #2856, update the testing.yml workflow dispatch option to let the comparison branch be manually defined. * Revert "Per #2856, reinitialize the climo cdf info pointer." This reverts commit 99b6bb3. * Per #2856, reinitialize the climo cdf info pointer. * Revert "Per #2856, update the testing.yml workflow dispatch option to let the comparison branch be manually defined." This reverts commit 0ae224f. * Per #2856, update the truth_data_version and input_data_version if main_vX.Y is not present in the branch name. * Update set_job_controls.sh * Update set_job_controls.sh * Per #2856, update logic for counting the maximum number of PCT, PRC, PJC, and PSTD lines. Need to multiply by the number of climo cdf bins. * Per #2856, add more error checking to avoid writing nan to .stat output files * Bugfix #2841 main_v11.1 tang_rad_winds (#2920) * Per #2841, unrelated, just removing a spurious character from a log message. * Per #2841, work in progress. Mostly just modifying whitespace and log messages so far * Per #2841, running tc_rmw with only UGRD input causes the tool to hang. Adding break statements to prevent the hang. * Per #2841, add new has_pressure_level() utility function and update tc_rmw to use it to deteremine whether or not the pressure dimension should be written the output rather than basing that off the number of levels being > 1. * Per #1849, fix to radial and tangential winds. * Per #2841, just changing a code comment about the longitude swap * Per #2841, update variable names for consistency and understanding. * Per #2841, the substantive bug fixed here is how we index into the U and V data in wind_ne_to_rt() using i_rev instead of i. Also, update the variable names for consistency and clarity.. * Per #2841, patch apparent copy/paste bug in tcrmw_grid.cc code. * Per #2841, only changing whitespace. * Per #2841, update logic in EarthRotation::set_tcrmw() to change the rotation of TCRMW grids from pointing north to pointing east. * Per #2841, fix warning message * Replace tab with spaces * Per #2841, correct the units for the azimuth netcdf output variable * Per #2841, reverse the x dimension of the rotated latlon grid to effectively switch from counterclockwise rotation to clockwise. * Feature #2855 v11.1.1 (#2923) * Per #2855, add v11.1.1 release notes. * Per #2841, fix bold formatting of release notes. * Update conf.py with actual 11.1.1 release date * bugfix #2936 point2grid for tripolar GFS input (#2945) * #2936 Support 1D lat/lon values * #2936 Change obs_type to TYPE_NCCF if FileType_NcCF is given from the config file --------- Co-authored-by: Howard Soh <[email protected]> * Bugfix #2958 main_v11.1 BAGSS SEDI CI (#2960) * Bugfix #2958 main_v11.1 ORSS (#2972) Co-authored-by: MET Tools Test Account <[email protected]> * Bugfix #2979 main_v11.1 MTD Grid (#2980) * Per #2979, remove nc_grid.h/.cc and replace it with calls to the read_netcdf_grid(...) and write_netcdf_proj(...) library utility functions. Note that these changes do compile but I haven't tested whether they actually fix the underlying problem. Also note that nc_utils_local.h/.cc can also likely be replaced with calls to common library functions. * Per #2979, remove references to nc_grid.o from the MTD test code. * Per #2979, the write_netcdf_proj(...) utility function adds the lat and lon dimensions. Update mtd to NOT define those dimensions prior to calling write_netcdf_proj(...). * Per #2979, add this issue to the revision history. --------- Co-authored-by: George McCabe <[email protected]> Co-authored-by: Julie Prestopnik <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: metplus-bot <[email protected]>
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* Add user execute permissions to compile script - main_v11.1 (#2740) * Changing -j to "-j 5" as the recommended value for MAKE_ARGS * Per #2761, update the MET development environment after upgrading seneca to debian bookworm. * Per #2761, define runtime python version for testing rather than using the default version which no longer exists in /usr/local * Per #2761, fix setting ci-skip-all * Per #2761, patching test_util.R to use the -C command line option for ncdiff. * #2652 Added find_var_by_standard_name and separated common codes to find_xy_vars * #2757 The SonarQube token and URL are replaced with the pre-defined strings, SONAR_TOKEN_VALUE and SONAR_SERVER_URL * #2757 Get the email list from the environment variable MET_CRON_EMAIL_LIST__MET (or MET_CRON_EMAIL_LIST) * #2757 The SonarQube token and URL are replaced by using the environment variable SONAR_TOKEN_VALUE and SONAR_SERVER_URL * Bugfix #2760 main_v11.1 --enable-python (#2767) * #2755 Added a header count and checking header count instead of using header id (hid) * Bugfix #2782 main_v11.1 MASSDEN (#2784) * Per #2782, update the multiple matching records warning message to include the table number for each record. * Per #2782, update read_grib2_record_list() to parse the level values and aerosol information correctly for table 4.48. * Per #2782 tweak variable naming convention. * Removing ${MAKE_ARGS} in some locations Removing ${MAKE_ARGS} from "make install" and "make test" for MET. Removing "met" prefix from met.configure.log because we really need config.log for any detail. It is confusing to have met.configure.log when that does not contain useful information. * Adding -lnetcdf -lm to configure_lib_args for NetCDF-CXX * Feature #2796 main_v11.1 gha node20 (#2798) * Per #2796, update versions of actions to fix the node 16 to 20 warning message. * Per #2796, port fixes for artifact name handling over from the develop branch to the main_v11.1 testing workflow. Also add the compilation_options.yml workflow since the workflows are being updated. * Create 11.1.0_casper * Recent changes to branch protection rules for the main_vX.Y branches have broken the logic of the update_truth.yml GHA workflow. Instead of submitting a PR to merge main_vX.Y into main_vX.Y-ref directly, use an intermediate update_truth_for_main_vX.Y branch. * Update the pull request template to include a question about expected impacts to existing METplus Use Cases. * Bugfix #2833 main_v11.1 azimuth (#2834) * Per #2833, fix n-1 bug when defining the azimuth delta for range/azimuth grids. * Per #2833, port fixes over from the bugfix_2833_develop_azimuth branch over to the main_v11.1 branch. --------- Co-authored-by: MET Tools Test Account <[email protected]> * Feature #2379 main_v11.1 sonarqube GHA (#2848) * Per #2379, migrating largely the same changes for #2379 into the main_v11.1 branch. The difference is that --enable-all is not used since that is not a valid configuration option for MET version 11.1.0. * Hotfix related to #2379. The sonar.newCode.referenceBranch and sonar.branch.name cannot be set to the same string! Only add the newCode definition when they differ. * Feature #2379 main_v11.1 sonarqube updates (#2851) * Feature #2379 main_v11.1 single_sq_project (#2866) * Bugfix 2867 point2grid qc flag main v11.1 (#2874) * #2867 Added point2grid_GOES_16_ADP_Enterprise_high and changed qc flags for ADP * #2867 Added get_nc_att_values_ * #2867 Added get_nc_att_values * #2867 Get the ADP QC flag values from the varibale attributes (support GOES16 Enterprise allgorithm) and apply them for QC Flags. Adjusted the ADP QC flags based on the variable QC values --------- Co-authored-by: Howard Soh <[email protected]> * Bugfix 2867 point2grid qc flag main v11.1 (#2878) * #2867 Added point2grid_GOES_16_ADP_Enterprise_high and changed qc flags for ADP * #2867 Added get_nc_att_values_ * #2867 Added get_nc_att_values * #2867 Get the ADP QC flag values from the varibale attributes (support GOES16 Enterprise allgorithm) and apply them for QC Flags. Adjusted the ADP QC flags based on the variable QC values * #2867 Added adjusted confidnece counts * #2867 Corretced indent * #2867 Corretced indent --------- Co-authored-by: Howard Soh <[email protected]> * #2884 No filtering by QC flags without -qc option (#2885) Co-authored-by: Howard Soh <[email protected]> * Per #2659, making updates as proposed at the 20240516 MET Eng. Mtg. (#2896) * Bugfix #2897 main_v11.1 python_valid_time (#2898) * Per #2897, fix typos in 3 log messages. Also fix the bug in storing the valid time strings. The time string in vld_array should exactly correspond to the numeric unixtime values in vld_num_array. Therefore they need to be updated inside the same if block. The bug is that we were storing only the unique unixtime values but storing ALL of the valid time string, not just the unique ones. * Per #2897, don’t waste time searching, just set vld_odd to n-1 * #2687 Saved the PBL input into the vector (#2903) * #2904 Changed R path to R-4.4.0 (#2909) Co-authored-by: Howard Soh <[email protected]> * Bugfix #2856 main_v11.1 ens_climo (#2917) * Per #2856, reinitialize the climo cdf info pointer. * Per #2856, update the testing.yml workflow dispatch option to let the comparison branch be manually defined. * Revert "Per #2856, reinitialize the climo cdf info pointer." This reverts commit 99b6bb3. * Per #2856, reinitialize the climo cdf info pointer. * Revert "Per #2856, update the testing.yml workflow dispatch option to let the comparison branch be manually defined." This reverts commit 0ae224f. * Per #2856, update the truth_data_version and input_data_version if main_vX.Y is not present in the branch name. * Update set_job_controls.sh * Update set_job_controls.sh * Per #2856, update logic for counting the maximum number of PCT, PRC, PJC, and PSTD lines. Need to multiply by the number of climo cdf bins. * Per #2856, add more error checking to avoid writing nan to .stat output files * Bugfix #2841 main_v11.1 tang_rad_winds (#2920) * Per #2841, unrelated, just removing a spurious character from a log message. * Per #2841, work in progress. Mostly just modifying whitespace and log messages so far * Per #2841, running tc_rmw with only UGRD input causes the tool to hang. Adding break statements to prevent the hang. * Per #2841, add new has_pressure_level() utility function and update tc_rmw to use it to deteremine whether or not the pressure dimension should be written the output rather than basing that off the number of levels being > 1. * Per #1849, fix to radial and tangential winds. * Per #2841, just changing a code comment about the longitude swap * Per #2841, update variable names for consistency and understanding. * Per #2841, the substantive bug fixed here is how we index into the U and V data in wind_ne_to_rt() using i_rev instead of i. Also, update the variable names for consistency and clarity.. * Per #2841, patch apparent copy/paste bug in tcrmw_grid.cc code. * Per #2841, only changing whitespace. * Per #2841, update logic in EarthRotation::set_tcrmw() to change the rotation of TCRMW grids from pointing north to pointing east. * Per #2841, fix warning message * Replace tab with spaces * Per #2841, correct the units for the azimuth netcdf output variable * Per #2841, reverse the x dimension of the rotated latlon grid to effectively switch from counterclockwise rotation to clockwise. * Feature #2855 v11.1.1 (#2923) * Per #2855, add v11.1.1 release notes. * Per #2841, fix bold formatting of release notes. * Update conf.py with actual 11.1.1 release date * bugfix #2936 point2grid for tripolar GFS input (#2945) * #2936 Support 1D lat/lon values * #2936 Change obs_type to TYPE_NCCF if FileType_NcCF is given from the config file --------- Co-authored-by: Howard Soh <[email protected]> * Bugfix #2958 main_v11.1 BAGSS SEDI CI (#2960) * Bugfix #2958 main_v11.1 ORSS (#2972) Co-authored-by: MET Tools Test Account <[email protected]> * Bugfix #2979 main_v11.1 MTD Grid (#2980) * Per #2979, remove nc_grid.h/.cc and replace it with calls to the read_netcdf_grid(...) and write_netcdf_proj(...) library utility functions. Note that these changes do compile but I haven't tested whether they actually fix the underlying problem. Also note that nc_utils_local.h/.cc can also likely be replaced with calls to common library functions. * Per #2979, remove references to nc_grid.o from the MTD test code. * Per #2979, the write_netcdf_proj(...) utility function adds the lat and lon dimensions. Update mtd to NOT define those dimensions prior to calling write_netcdf_proj(...). * Per #2979, add this issue to the revision history. * Update config_options.rst (#2986) Updating to fix a typo in which "mesage_type_group_map" is mis-spelled. * Hotfix to main_v11.1 to set the MET_TEST_INPUT path on seneca after the change to the SEEPS filename. --------- Co-authored-by: George McCabe <[email protected]> Co-authored-by: Julie Prestopnik <[email protected]> Co-authored-by: John Halley Gotway <[email protected]> Co-authored-by: MET Tools Test Account <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: Howard Soh <[email protected]> Co-authored-by: Jonathan Vigh <[email protected]> Co-authored-by: metplus-bot <[email protected]>
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Same changes as PR MET#2959 but for
main_v11.1instead ofdevelop. Please review these as a pair.Expect to see differences flagged in many output containing CTS lines.