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Bugfix #2390 main_v11.0 fix compiling hdf5 with zlib and handle NetCDF-C zip #2403

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merged 1 commit into from
Jan 18, 2023
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Bugfix #2390 main_v11.0 fix compiling hdf5 with zlib and handle NetCDF-C zip #2403

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17 changes: 11 additions & 6 deletions internal/scripts/installation/compile_MET_all.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -95,9 +95,15 @@ if [ ! -e $TAR_DIR ]; then
fi

# Update library linker path
export LD_LIBRARY_PATH=${TEST_BASE}/external_libs/lib${MET_PYTHON:+:$MET_PYTHON/lib}${MET_NETCDF:+:$MET_NETCDF/lib}${MET_HDF5:+:$MET_HDF5/lib}${MET_BUFRLIB:+:$MET_BUFRLIB}${MET_GRIB2CLIB:+:$MET_GRIB2CLIB}${LIB_JASPER:+$LIB_JASPER}${LIB_LIBPNG:+:$LIB_JASPER}${LIB_Z:+$LIB_Z}${MET_GSL:+:$MET_GSL/lib}${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}
export LD_LIBRARY_PATH=${TEST_BASE}/external_libs/lib${MET_PYTHON:+:$MET_PYTHON/lib}${MET_NETCDF:+:$MET_NETCDF/lib}${MET_HDF5:+:$MET_HDF5/lib}${MET_BUFRLIB:+:$MET_BUFRLIB}${MET_GRIB2CLIB:+:$MET_GRIB2CLIB}${LIB_JASPER:+:$LIB_JASPER}${LIB_LIBPNG:+:$LIB_LIBPNG}${LIB_Z:+:$LIB_Z}${MET_GSL:+:$MET_GSL/lib}${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}
echo "LD_LIBRARY_PATH = ${LD_LIBRARY_PATH}"

# if LIB_Z is not set in the environment file, set it to the
# lib directory so it can be used to install HDF5 with zlib support
if [[ -z "$LIB_Z" ]]; then
LIB_Z=${LIB_DIR}/lib
fi

# Constants
if [[ -z ${MET_GRIB2CLIB} ]] && [[ -z ${MET_GRIB2C} ]]; then
COMPILE_ZLIB=1
Expand Down Expand Up @@ -617,7 +623,7 @@ if [ $COMPILE_NETCDF -eq 1 ]; then
tar -xzf ${TAR_DIR}/hdf5*.tar.gz
cd hdf5*
echo "cd `pwd`"
echo "./configure --prefix=${LIB_DIR} --with-zlib=${LIB_DIR}/lib CFLAGS=-fPIC CXXFLAGS=-fPIC FFLAGS=-fPIC LDFLAGS=-L${LIB_DIR}/lib CPPFLAGS=-I${LIB_DIR}/include > configure.log 2>&1"
echo "./configure --prefix=${LIB_DIR} --with-zlib=${LIB_Z} CFLAGS=-fPIC CXXFLAGS=-fPIC FFLAGS=-fPIC LDFLAGS=-L${LIB_DIR}/lib CPPFLAGS=-I${LIB_DIR}/include > configure.log 2>&1"
./configure --prefix=${LIB_DIR} --with-zlib=${LIB_Z} CFLAGS=-fPIC CXXFLAGS=-fPIC FFLAGS=-fPIC LDFLAGS=-L${LIB_DIR}/lib:${LIB_Z} CPPFLAGS=-I${LIB_DIR}/include > configure.log 2>&1
ret=$?
if [ $ret != 0 ]; then
Expand All @@ -635,10 +641,9 @@ if [ $COMPILE_NETCDF -eq 1 ]; then
echo
echo "Compiling NetCDF-C at `date`"
mkdir -p ${LIB_DIR}/netcdf
cd ${LIB_DIR}/netcdf
rm -rf netcdf*
tar -xzf ${TAR_DIR}/netcdf-4*.tar.gz
cd netcdf-c-4*
rm -rf ${LIB_DIR}/netcdf/netcdf*
tar -xzf ${TAR_DIR}/netcdf-4*.tar.gz -C ${LIB_DIR}/netcdf > /dev/null 2>&1 || unzip ${TAR_DIR}/netcdf-4*.zip -d ${LIB_DIR}/netcdf
cd ${LIB_DIR}/netcdf/netcdf-*
export FC=''
export F90=''
echo "cd `pwd`"
Expand Down