This repository contains the scripts for a python implementation of ASM_clust. The "prelim" directory contains the slower and less effective implementation described in Speth and Orphan, biorxiv, 2019. https://www.biorxiv.org/content/10.1101/792739v1
The script and notebook are functional in the conda environment described in the yml file, but generally this python implementation isn't designed to be broadly useable yet.