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26 Open 64 Closed
26 Open 64 Closed
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Issues list

can not install the SpatialExperiment in R 4.1.3
#162 opened Dec 13, 2024 by honghh2018
constructor loses mainExpName and altExpNames from SCE
#161 opened Dec 9, 2024 by LiNk-NY
Allow additional SpatialImage file extensions
#159 opened Nov 4, 2024 by andrewGhazi
2
TreeSummarizedExperiment support
#158 opened Oct 4, 2024 by TuomasBorman
12
Unexpected error when spe$sample_id is a factor
#151 opened May 29, 2024 by Nick-Eagles
1
error adding image
#147 opened Jan 17, 2024 by alfonsosaera
7
spatial proteomics data to SPE
#146 opened Jan 15, 2024 by cathalgking
1
More flexible colnames of imgData
#142 opened Sep 29, 2023 by senbaikang
Deprecate BumpyMatrix functionality for molecule-based data
#141 opened Sep 2, 2023 by lmweber
@lmweber
2
SpatialImage doc questions
#131 opened Nov 21, 2022 by lgeistlinger
@lmweber
2
restructure imgData with flexible metadata
#127 opened Nov 17, 2022 by HelenaLC
move read10xVisium to TENxIO
#126 opened Nov 17, 2022 by HelenaLC
@HelenaLC
27
read10xVisium tries to add outs to my paths
#123 opened Nov 2, 2022 by LTLA
3
Could imgData also store other image classes?
#121 opened Oct 26, 2022 by lgeistlinger
1
imgData slot restrictions
#120 opened Oct 26, 2022 by lgeistlinger
5
How to SpatialFeaturePlot for Aggregated Samples?
#119 opened Oct 25, 2022 by chancharikmitra
2
Latest Spaceranger 2.0 output structure change breaks read10xVisium
#116 opened Oct 5, 2022 by raysinensis
@lmweber
1
Convert Seurat to SpatialExperiment
#115 opened Sep 19, 2022 by MarcElosua
3
Dependency stack
#114 opened Sep 7, 2022 by lgeistlinger
4
?imgRaster should offer a choice between the SpatialExperiment and SpatialImage methods
#111 opened Aug 10, 2022 by LTLA
5
documentation needs update
#106 opened May 24, 2022 by drighelli
@drighelli
cbind when subsetting spots from samples
#104 opened Mar 24, 2022 by lmweber
@HelenaLC
4
Protect shuffling of rows in spatialCoords
#103 opened Mar 9, 2022 by lmweber
10
Ambiguous column names in SPE objects with multiple samples
#100 opened Feb 22, 2022 by lmweber
@HelenaLC
14
Problem with installing due to the dependency magick
#88 opened Nov 1, 2021 by EliHei2
5
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