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feat: return only complete codesystem concepts #63

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merged 3 commits into from
Sep 27, 2023
Merged

feat: return only complete codesystem concepts #63

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c0a4fbe
feat: return only complete codesystem concepts
velramiir Sep 27, 2023
1a94ad0
feat: change filter location and log
velramiir Sep 27, 2023
3afa7b8
chore: update gitignore
velramiir Sep 27, 2023
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3 changes: 3 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -24,3 +24,6 @@ yarn-error.log*

# Local dot-base checkout for running the stack
dot-base/

# local npm cache
.npm
20 changes: 20 additions & 0 deletions src/model/icd10CodeSystem.ts
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Expand Up @@ -47,6 +47,22 @@ class ICD10gm {
elem.property ? ICD10gm.isTypeICDCode(elem.property) : false
);

const incompleteConcepts = processedCodesystem.concept.filter(
(concept) => !ICD10gm.isComplete(concept)
);
if (incompleteConcepts.length > 0) {
const incompleteConceptsList = incompleteConcepts
.map((concept) => `{code: ${concept.code}, display: ${concept.display}}`)
.join(", ");
logger.warn(
`WARNING: The ICD10 codesystem contains ${incompleteConcepts.length} incomplete concept(s) missing either code or display. The affected concepts are: ${incompleteConceptsList}.`
);
}

processedCodesystem.concept = processedCodesystem.concept.filter((concept) =>
ICD10gm.isComplete(concept)
);

processedCodesystem.concept = ICD10gm.trimAndCopySearchFields(processedCodesystem.concept);

return processedCodesystem;
Expand All @@ -58,6 +74,10 @@ class ICD10gm {
);
}

private static isComplete(concept: R4.ICodeSystem_Concept) {
return concept.code && concept.display;
}

private static trimAndCopySearchFields(
concept: R4.ICodeSystem_Concept[]
): R4.ICodeSystem_Concept[] {
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