Add Nextflow support #1049
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| pull_request_target: | |
| types: [labeled] | |
| jobs: | |
| test: | |
| if: ${{ github.event.action != 'labeled' || (github.event.action == 'labeled' && github.event.label.name == 'run tests') }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| - uses: DeterminateSystems/nix-installer-action@main | |
| - uses: DeterminateSystems/magic-nix-cache-action@main | |
| - run: echo "${GITHUB_WORKSPACE}" >> $GITHUB_PATH | |
| - run: nix build .#simple-tests --print-build-logs | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./result/coverage.xml | |
| lint: | |
| if: ${{ github.event.action != 'labeled' || (github.event.action == 'labeled' && github.event.label.name == 'run tests') }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| - uses: DeterminateSystems/nix-installer-action@main | |
| - uses: DeterminateSystems/magic-nix-cache-action@main | |
| - run: echo "${GITHUB_WORKSPACE}" >> $GITHUB_PATH | |
| - run: nix develop .#format -c poetry run isort --check-only --diff ./tested ./tests | |
| - run: nix develop .#format -c poetry run black --check ./tested ./tests | |
| types: | |
| if: ${{ github.event.action != 'labeled' || (github.event.action == 'labeled' && github.event.label.name == 'run tests') }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.ref }} | |
| repository: ${{ github.event.pull_request.head.repo.full_name }} | |
| - uses: DeterminateSystems/nix-installer-action@main | |
| - uses: DeterminateSystems/magic-nix-cache-action@main | |
| - run: echo "${GITHUB_WORKSPACE}" >> $GITHUB_PATH | |
| - run: nix develop .#types -c pyright ./tested ./tests |