build lessons 3-5 and update figs

dmgatti · Oct 16, 2024 · 41391ba · 41391ba
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diff --git a/_episodes/03-Overview-scRNA-seq-Data.md b/_episodes/03-Overview-scRNA-seq-Data.md
diff --git a/_episodes/04-Quality-Control.md b/_episodes/04-Quality-Control.md
diff --git a/_episodes/05-Common-Analyses.md b/_episodes/05-Common-Analyses.md
diff --git a/fig/rmd-03-cell_counts-1.png b/fig/rmd-03-cell_counts-1.png
diff --git a/fig/rmd-03-cell_counts-2.png b/fig/rmd-03-cell_counts-2.png
diff --git a/fig/rmd-03-counts_image-1.png b/fig/rmd-03-counts_image-1.png
diff --git a/fig/rmd-04-doublet_plot-1.png b/fig/rmd-04-doublet_plot-1.png
diff --git a/fig/rmd-04-filter_gene_counts-1.png b/fig/rmd-04-filter_gene_counts-1.png
diff --git a/fig/rmd-04-filter_gene_counts_5k-1.png b/fig/rmd-04-filter_gene_counts_5k-1.png
diff --git a/fig/rmd-04-filter_umi-1.png b/fig/rmd-04-filter_umi-1.png
diff --git a/fig/rmd-04-gene_count_hist_2-1.png b/fig/rmd-04-gene_count_hist_2-1.png
diff --git a/fig/rmd-04-genes_umi-1.png b/fig/rmd-04-genes_umi-1.png
diff --git a/fig/rmd-04-seurat_counts_plots-1.png b/fig/rmd-04-seurat_counts_plots-1.png
diff --git a/fig/rmd-04-seurat_counts_plots2-1.png b/fig/rmd-04-seurat_counts_plots2-1.png
diff --git a/fig/rmd-04-sum_cell_counts-1.png b/fig/rmd-04-sum_cell_counts-1.png
diff --git a/fig/rmd-05-elbow-1.png b/fig/rmd-05-elbow-1.png
diff --git a/fig/rmd-05-elbow2-1.png b/fig/rmd-05-elbow2-1.png
diff --git a/fig/rmd-05-elbow3-1.png b/fig/rmd-05-elbow3-1.png
diff --git a/fig/rmd-05-pcplot-1.png b/fig/rmd-05-pcplot-1.png
diff --git a/fig/rmd-05-plot_umap-1.png b/fig/rmd-05-plot_umap-1.png
diff --git a/fig/rmd-05-unnamed-chunk-2-1.png b/fig/rmd-05-unnamed-chunk-2-1.png
diff --git a/fig/rmd-05-var_features-1.png b/fig/rmd-05-var_features-1.png