GitHub - dmgatti/NASA-GRSD-HS: NASA HZE QTL: General Code Bank

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Name		Name	Last commit message	Last commit date
Latest commit History 77 Commits
.DS_Store		.DS_Store
1. Reading Raw MegaMUGA Data.R		1. Reading Raw MegaMUGA Data.R
10. QTL Clustering.R		10. QTL Clustering.R
11. Publication Plotting.R		11. Publication Plotting.R
2. Genome Reconstruction.R		2. Genome Reconstruction.R
3. Logistic Association Mapping.R		3. Logistic Association Mapping.R
4. Linear Association Mapping.R		4. Linear Association Mapping.R
5. CoxPH Association Mapping HQSNPS.R		5. CoxPH Association Mapping HQSNPS.R
6. Define QTL.R		6. Define QTL.R
7. Significance threshold.R		7. Significance threshold.R
8. Resample model averaging.R		8. Resample model averaging.R
9. Biological Effect.R		9. Biological Effect.R
ANOVA.R		ANOVA.R
Background (613).R		Background (613).R
Background Plots.R		Background Plots.R
Bayesint.R		Bayesint.R
Chisq.test.R		Chisq.test.R
DG_fixed_assoc_coxph_hq.R		DG_fixed_assoc_coxph_hq.R
DOQTL_0.99.1.tar.gz		DOQTL_0.99.1.tar.gz
DOQTL_1.0.5.tar.gz		DOQTL_1.0.5.tar.gz
Gamma (615).R		Gamma (615).R
Genome Reconstruction of DO Mice.R		Genome Reconstruction of DO Mice.R
Get allele calls.R		Get allele calls.R
HS.RMA.chrom.R		HS.RMA.chrom.R
HS.cox.RMA.chrom.R		HS.cox.RMA.chrom.R
HS_DOQTL.R		HS_DOQTL.R
HS_assoc.R		HS_assoc.R
HZE (622).R		HZE (622).R
Heatmap.R		Heatmap.R
Heatplot function.R		Heatplot function.R
KM code.R		KM code.R
Kinship plot.R		Kinship plot.R
MaxLOD.R		MaxLOD.R
MegaMUGA Allele Query.R		MegaMUGA Allele Query.R
Neurobehavioral Analysis.R		Neurobehavioral Analysis.R
Plotting QTL.R		Plotting QTL.R
QTL.R		QTL.R
Regress a Peak.R		Regress a Peak.R
SNP Retrieval and Manipulation.R		SNP Retrieval and Manipulation.R
Stacked Bar Charts (tumors).R		Stacked Bar Charts (tumors).R
Test.R		Test.R
Weight Analysis.R		Weight Analysis.R
YEAST.R		YEAST.R
assoc_coxph_hq.R		assoc_coxph_hq.R
assoc_loco_lm_hq.R		assoc_loco_lm_hq.R
cloud.file.R		cloud.file.R
get.genotype.R		get.genotype.R
glm(poisson).R		glm(poisson).R
plot.hs.qtl.R		plot.hs.qtl.R
qqman.R		qqman.R
scanone.R		scanone.R
temp file.R		temp file.R