Fixed cosmomc sbatch error

dessn · Feb 25, 2021 · 2d1daa2 · 2d1daa2
1 parent 4bbbc17
commit 2d1daa2
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/pippin/cosmomc.py b/pippin/cosmomc.py
@@ -213,11 +213,11 @@ def _run(self):
             header_dict = {
                     "job-name": self.job_name,
                     "time": "34:00:00",
-                    "ntasks": f"{max([int(self.num_walkers/5),1])}",
+                    "ntasks": f"10",
                     "array": f"1-{len(self.ini_files)}",
                     "cpus-per-task": "1",
                     "output": self.logfile,
-                    "mem-per-cpu": f"{max([int(20/self.num_walkers),4])}GB"
+                    "mem-per-cpu": f"2GB"
                     }
             self.update_header(header_dict)
 

diff --git a/pippin/tasks/cosmomc b/pippin/tasks/cosmomc
@@ -1,5 +1,6 @@
 export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
-
+export I_MPI_HYDRA_TOPOLIB=ipl 
+
 #module unload openmpi
 #module load intelmpi/5.1+intel-16.0
 #module load cfitsio/3