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feat(jax): build nlist in the SavedModel & fix nopbc for StableHLO and SavedModel #9828

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Run time

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Job	Run time
Build C++ (cpu, cpu)	2m 42s
Build C++ (cuda, cuda)	3m 42s
Build C++ (cuda120, cuda)	3m 48s
Build C++ (rocm, rocm)	3m 35s
Build C++ (clang, clang)	2m 25s
Pass building C++	2s
	16m 14s