chore: Add new outputs included in new microview version (#37)

* chore: Update microview module with new outputs Signed-off-by: jvfe <[email protected]> * chore: Bump to 1.0.2 Signed-off-by: jvfe <[email protected]> --------- Signed-off-by: jvfe <[email protected]>
dalmolingroup · May 2, 2024 · ae51217 · ae51217
1 parent 7b48870
commit ae51217
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Showing 2 changed files with 5 additions and 3 deletions.
diff --git a/modules/local/microview.nf b/modules/local/microview.nf
@@ -4,14 +4,15 @@ process MICROVIEW {
 
     conda "bioconda::microview=0.10.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'docker://docker.io/jvfe/microview:v0.10.1':
-        'docker.io/jvfe/microview:v0.10.1' }"
+        'docker://docker.io/jvfe/microview:v0.11.0':
+        'docker.io/jvfe/microview:v0.11.0' }"
 
     input:
     path reports
 
     output:
     path "microview_report.html", emit: report
+    path "microview_tables"     , emit: tables
     path "versions.yml"         , emit: versions
 
     when:
@@ -35,6 +36,7 @@ process MICROVIEW {
 
     """
     touch microview_report.html
+    mkdir microview_tables
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":

diff --git a/nextflow.config b/nextflow.config
@@ -201,7 +201,7 @@ manifest {
     description     = """A pipeline for taxonomic classification and functional annotation of metagenomics reads. Based on MEDUSA."""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=22.10.1'
-    version         = '1.0.1'
+    version         = '1.0.2'
     doi             = ''
 }