Update apptainer.py

daisybio · Feb 28, 2024 · 73b6b2f · 73b6b2f
1 parent bb4866a
commit 73b6b2f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/apptainer.py b/apptainer.py
@@ -53,7 +53,7 @@ def process_configs(configs: dict) -> dict:
 
 internal_command = f"java -Xmx{memory}g -jar /srv/TF-Prioritizer.jar -t {threads} -o /srv/wd -c /srv/input/configs.json"
 
-external_command = f"apptainer run " \
+external_command = f"apptainer run --no-mount tmp --writable-tmpfs" \
                    f" -B {docker_config_file}:/srv/input/configs.json:ro {volume_string} -B {output}:/srv/wd:rw " \
                    f"docker://{image} {internal_command}"