-
Notifications
You must be signed in to change notification settings - Fork 119
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
45fdbdd
commit abf8fed
Showing
3 changed files
with
136 additions
and
0 deletions.
There are no files selected for viewing
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,136 @@ | ||
<!doctype html> | ||
<html> | ||
<head> | ||
<meta charset="utf-8"> | ||
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no"> | ||
|
||
<title>Cytoscape and Single Cell Analysis</title> | ||
|
||
<link rel="stylesheet" href="../css/reveal.css"> | ||
<link rel="stylesheet" href="../css/theme/cytoscape-presentation-1.css"> | ||
|
||
<!-- Theme used for syntax highlighting of code --> | ||
<link rel="stylesheet" href="../lib/css/zenburn.css"> | ||
|
||
<!-- Printing and PDF exports --> | ||
<script> | ||
var link = document.createElement( 'link' ); | ||
link.rel = 'stylesheet'; | ||
link.type = 'text/css'; | ||
link.href = window.location.search.match( /print-pdf/gi ) ? '../css/print/pdf.css' : '../css/print/paper.css'; | ||
document.getElementsByTagName( 'head' )[0].appendChild( link ); | ||
</script> | ||
</head> | ||
<body> | ||
<div class="reveal"> | ||
<div class="slides"> | ||
<!-- Customizable title slide --> | ||
<section> | ||
<img src="modules/zs/DSC_4964.png"> | ||
</section> | ||
<section> | ||
<h2>Cytoscape: A Tool for the Visualization, Analysis, and Integration of Biological Data</h2> | ||
<br /><br /> | ||
<h5 style="font-size: 60%">John "Scooter" Morris</h5> | ||
<br /> | ||
<h5 style="font-size: 80%">ZS Associates | ||
<br/><span style="font-size: 80%">Feb 16 2024</span></h5> | ||
|
||
<aside class="notes" data-markdown> | ||
Add speaker notes here... | ||
</aside> | ||
</section> | ||
|
||
<section> | ||
<section> | ||
<h1>Introductions</h1> | ||
<highlight>John "Scooter" Morris, UCSF</highlight><br /> | ||
<ul> | ||
<li>Executive director, Resource for Biocomputing, Visualization, and Informatics</li> | ||
<li>Roving Engineer, National Resource for Network Biology</li> | ||
<li>Cytoscape team since 2006</li> | ||
<li>Author of over a dozen Cytoscape apps</li> | ||
</ul> | ||
<aside class="notes" data-markdown> | ||
Add speaker notes here... | ||
</aside> | ||
</section> | ||
|
||
</section> | ||
<h1> Introduction </h1> | ||
<ul> | ||
<li class="fragment">What to talk about???</li> | ||
</ul> | ||
<img class="simple fragment" src="module/zs/ppi.png"> | ||
<img class="simple fragment" src="module/zs/sc.png"> | ||
</section> | ||
|
||
<section> | ||
<h2>PPI and Single Cell Analysis</h2> | ||
<h5 style="font-size: 60%">John "Scooter" Morris</h5> | ||
<br /> | ||
<h5 style="font-size: 80%">ZS Associates | ||
<br/><span style="font-size: 80%">Feb 16 2024</span></h5> | ||
</section> | ||
</section> | ||
|
||
<!-- Define upto 5 Ribbons per slide to compose links to a set of modules --> | ||
<section> | ||
<a href="#" class="navigate-next"><ribbon>Single Cell Network Visualization</ribbon></a> | ||
|
||
<aside class="notes" data-markdown> | ||
Add speaker notes here... | ||
</aside> | ||
</section> | ||
|
||
<section id="single-cell" data-external="modules/single-cell/module.html"></section> | ||
|
||
<section> | ||
<a href="#" class="inactive"><ribbon>Single Cell Network Visualization</ribbon></a> | ||
</section> | ||
|
||
</div> | ||
</div> | ||
|
||
<script src="../lib/js/head.min.js"></script> | ||
<script src="../js/reveal.js"></script> | ||
<script> | ||
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ | ||
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), | ||
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) | ||
})(window,document,'script','https://www.google-analytics.com/analytics.js','ga'); | ||
|
||
ga('create', 'UA-155159-15', 'auto'); | ||
ga('send', 'pageview'); | ||
|
||
</script> | ||
<script> | ||
// More info https://github.com/hakimel/reveal.js#configuration | ||
Reveal.initialize({ | ||
history: true, | ||
controls: true, | ||
progress: true, | ||
slideNumber: "c", | ||
touch: true, | ||
fragments: true, | ||
help: true, | ||
showNotes: false, | ||
previewLinks: false, | ||
transition: 'slide', // none/fade/slide/convex/concave/zoom | ||
width: 1200, | ||
height: 860, | ||
autoSlide: 0, | ||
|
||
// More info https://github.com/hakimel/reveal.js#dependencies | ||
dependencies: [ | ||
{ src: '../plugin/markdown/marked.js' }, | ||
{ src: '../plugin/markdown/markdown.js' }, | ||
{ src: '../plugin/zoom-js/zoom.js', async: true, condition: function(){ return !!document.body.classList; } }, | ||
{ src: '../plugin/notes/notes.js', async: true }, | ||
{ src: '../plugin/highlight/highlight.js', async: true, callback: function() { hljs.initHighlightingOnLoad(); } }, | ||
{ src: '../plugin/external/external.js', condition: function() { return !!document.querySelector( '[data-external]' ); } } | ||
] | ||
}); | ||
</script> | ||
</body> | ||
</html> |