A collection of public MetaSBT databases with taxonomically organised Sequence Bloom Trees (SBTs) built over curated sets of microbial genomes.
Databases are produced with the open-source MetaSBT framework available at https://github.com/cumbof/MetaSBT.
MetaSBT databases are nothing else than big tar archives containing bloom filter representations of microbial genomes taxonomically organised in SBTs. You can extract the archive by yourself but most of the files in there contain absolute paths that are not compatible with their actual location on your file system.
In order to make it easier to deploy and distribute a database, we provide an automated procedure implemented into the install module of the MetaSBT framework.
Have a look at the official documentation for additional information about how to retrieve the most updated list of public database and how to install them at https://github.com/cumbof/MetaSBT/wiki/Installing-public-pre-built-databases.
Note: Are you interested in using our software and databases, or you want to build your own private database, but you do not have enough computational resources? Get in touch with us, we are always happy to collaborate!
Long-term discussion and bug reports are maintained via GitHub Discussions and Issues under the MetaSBT framework repository.
Please, (i) be sure that there are no existing issues/discussions concerning the same topic before opening a new issue/discussion; (ii) write a clear and concise description of what the issue/discussion is about; (iii) specifying the list of steps to reproduce the behavior in addition to versions and other technical details is highly recommended.
Discussions, issues, and PRs are not allowed in this repository.
If you need support, please open an Issue or a new Discussion under the MetaSBT framework repository. We will be happy to answer your questions and help you troubleshoot any kind of issue concerning our framework and databases.
Copyright © 2022 Fabio Cumbo, Daniel Blankenberg. See LICENSE for additional details.