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StaG v0.4.1
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@boulund boulund released this 02 Feb 12:00
· 363 commits to master since this release
v0.4.1
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Learn about vigilant mode.

Finally, the long overdue release of StaG v0.4.1 has been merged to the master branch. Many of the new features in this version have been in use in CTMR's production environment for almost a year.

The main new features are:

  • Created Singularity images for all conda environments. Run with --use-singularity (do not combine with --use-conda).
  • Added custom reimplementation of AMRPlusPlus v2.0 which can be executed with either --use-singularity or --use-conda.

Read about all the details in the CHANGELOG.

Some known issues still exist in the assembly and binning steps. Some observations of cache issues with Singularity and metaphlan2 use has also been reported.

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