KP.1.1+S:S71Y,S31del or JN.1.11.1/LP.2 recombinant(62 seqs, 14 countries)

[xz-keg]

KP.1.1+C21774A,del21653_21655(S:S71Y, S31del)

This is another re-proposal due to inaccurate proposal by DailyCovidCases.

From branch 34 of sars-cov-2-variants/lineage-proposals#1502

This can also be explained as JN.1.11.1/LP.2 recombinant with breakpoint between 20595 and 21652 (no private mutation needed)

GISAID query: A24819G, del21770_21775, del21653_21655, -4999
Supplementary Query 1: A24819G, C21774A, -4999
Supplementary Query 2: C1263T,T11551C,C20823T, -C21774A,-del21770
No. of seqs: 33(China 2 Japan 1 Malaysia 5 Singapore 10 South Korea 3 USA 12(2 from India))

First: EPI_ISL_19095593, 2024-4-1,Singapore
Latest: EPI_ISL_19351788, 2024-8-5, Malaysia

usher

[FedeGueli]

there is a typo it is S:S71Y!

[Over-There-Is]

A24819G, del21770_21775, -4999=33
A24819G, C21774A, -4999=8
maybe there are at least 41 sequences.

[Over-There-Is]

C1263T,T11551C,C20823T, -C21774A, -del21770_21775=1
this sequence seems belonging to this branch too

[xz-keg]

Add two supplementary queries that capture the Slovenia and Phillipines sample. Total shall be 42.

[xz-keg]

48, UK

[xz-keg]

+1 Denmark

[xz-keg]

+1 Netherlands

[xz-keg]

52, Croatia

[DailyCovidCases]

Tree now:
usher

@corneliusroemer Is this branch worth a designation?

[FedeGueli]

last sampled one montha go worth closing it maybe,

[xz-keg]

+1 Australia

[FedeGueli]

this is close to be dead

[DailyCovidCases]

Slow closing it down

[xz-keg]

no new seqs