JN.1+S:Q677L+S:F456L with C14676T branch (67 seqs)

[DailyCovidCases]

From branch 70 of sars-cov-2-variants/lineage-proposals#1253
JN.1+C14676T+S:Q677L+S:F456L
Query: C14676T, A23592T, T22928C
No. of seqs: 21 (Canada 1 Israel 2 Netherland 1 Oman 1 Spain 3 UK 3 USA 10)
First: EPI_ISL_19008570, 2024-2-26
Latest: EPI_ISL_19184501, 2024-5-24
usher

[FedeGueli]

25

[DailyCovidCases]

Tracked in tracker70

[xz-keg]

There is an S:R346T and an S:R346S sub-branch emerged from this.

[FedeGueli]

There is an S:R346T and an S:R346S sub-branch emerged from this.

yeah the r346T branch was singlet 55 of sars-cov-2-variants/lineage-proposals#1089, they don't seem fast tough.

[FedeGueli]

There is an S:R346T and an S:R346S sub-branch emerged from this.

New sample from the 346S branch (with additional S:E180D) from Israel, so still around in July
Also one 346T from Sapin in July:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice37_genome_test_204b4_df0550.json?c=userOrOld&label=id:node_7109826

[FedeGueli]

Also a very recent GBW sample from France with S:Y269H please reopen

[DailyCovidCases]

Tree now: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_1cdfc_799030.json?f_userOrOld=uploaded%20sample

[FedeGueli]

63

[Over-There-Is]

67 now

[FedeGueli]

67 now

only 5 from. August 4 of them part of a likely Irish cluster. i would close this one

[DailyCovidCases]

Tree now:
usher

ping @corneliusroemer Is this branch worth a designation?

[Over-There-Is]

71