JN.1+S:L176F+S:F456L with C18894T branch (16 seqs)

[DailyCovidCases]

From branch 41 of sars-cov-2-variants/lineage-proposals#1253
JN.1+S:L176F+S:F456L, Query: C22088T,C18894T,T22928C,-17562
No. of seqs: 33 (Australia 1 Canada 2 China 6 Franch 2 Germany 2 Nepal 1 New Zealand 2 South Korea 5 Thailand 1 UK 1 USA 10)
First: EPI_ISL_18982793, 2024-2-14
Latest: EPI_ISL_19167486, 2024-5-20
usher

[FedeGueli]

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice2_genome_test_204d2_ffa5d0.json?c=userOrOld&label=id:node_7163602

Not monophyletic close it , it is just 14-16 sequences in reality not worth to be proposed

Anyway this the correct query:

C22088T,C18894T,T22928C,-17562,-G24872T,-A7888T,-C1762A,-C875T,-G4162A,-G1729A,-A24727T

[DailyCovidCases]

Tracked in tracker41

[FedeGueli]

this is the one you are proposing , dead for sure.

the query also the revisited one catches mutliple lineages i ve checked them and beyond a LF.2 +176F from Mexico there is little interesting or recent:

https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_test_917b_1b9290.json?f_userOrOld=uploaded%20sample&label=id:node_6997457