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JN.1 + S:F456L with C26873T branch (409 seqs) #2622

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DailyCovidCases opened this issue May 29, 2024 · 4 comments
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JN.1 + S:F456L with C26873T branch (409 seqs) #2622

DailyCovidCases opened this issue May 29, 2024 · 4 comments

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@DailyCovidCases
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DailyCovidCases commented May 29, 2024 •
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From branch 51 of sars-cov-2-variants/lineage-proposals#1253
JN.1+C26873T+S:F456L,
Query: T22928C, C26873T, C18894T
No. of seqs: 59 (Australia 2 Canada 28 China 5 Germany 1 Japan 1 Netherlands 1 New Zealand 5 Portugal 1 Singapore 3 South Korea 2 USA 10)
First: EPI_ISL_18896825, 2024-1-18
Latest: EPI_ISL_19153513, 2024-5-12
usher
Screenshot (91)
@DailyCovidCases DailyCovidCases changed the title JN.1 + S:F456L with C26873T branch (59 seqs) JN.1 + S:F456L with C26873T branch (59 seqs, 11 countries) May 29, 2024
@FedeGueli FedeGueli mentioned this issue May 29, 2024
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@FedeGueli
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Close this one not monophyletic:
Screenshot 2024-06-17 alle 10 54 14
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_test_1aa84_ff9170.json?f_userOrOld=uploaded%20sample&label=id:node_7029116

@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Jun 25, 2024
@DailyCovidCases DailyCovidCases changed the title JN.1 + S:F456L with C26873T branch (59 seqs, 11 countries) JN.1 + S:F456L with C26873T branch (117 seqs, 16 countries) Jul 2, 2024
@DailyCovidCases DailyCovidCases changed the title JN.1 + S:F456L with C26873T branch (117 seqs, 16 countries) JN.1 + S:F456L with C26873T branch (183 seqs) Jul 10, 2024
@DailyCovidCases
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DailyCovidCases commented Jul 10, 2024 •
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Tracked in tracker51

@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Jul 10, 2024
@DailyCovidCases DailyCovidCases changed the title JN.1 + S:F456L with C26873T branch (183 seqs) JN.1 + S:F456L with C26873T branch (212 seqs) Jul 16, 2024
@DailyCovidCases DailyCovidCases changed the title JN.1 + S:F456L with C26873T branch (212 seqs) JN.1 + S:F456L with C26873T branch (212 seqs, not monophyletic) Jul 26, 2024
@DailyCovidCases DailyCovidCases changed the title JN.1 + S:F456L with C26873T branch (212 seqs, not monophyletic) JN.1 + S:F456L with C26873T branch (409 seqs) Aug 25, 2024
@FedeGueli
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Close this one not monophyletic: Screenshot 2024-06-17 alle 10 54 14 https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/singleSubtreeAuspice_genome_test_1aa84_ff9170.json?f_userOrOld=uploaded%20sample&label=id:node_7029116

this is not monophyletic , if you see any branch growing you have to modify the query and the proposal and the title then

@ryhisner
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ryhisner commented Sep 5, 2024

image

@DailyCovidCases DailyCovidCases closed this as not planned Won't fix, can't repro, duplicate, stale Sep 5, 2024
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@ryhisner @FedeGueli @DailyCovidCases