aqua

.github/workflows/ci.yml

@@ -12,8 +12,7 @@ jobs:
         version:
           - '1.7'
           - '1.8'
-          - '1'
-          #- 'nightly'
+          - '1.9'
         os:
           - ubuntu-latest
           - macOS-latest
@@ -29,9 +28,4 @@ jobs:
       - uses: julia-actions/cache@v1
       - uses: julia-actions/julia-buildpkg@latest
       - uses: julia-actions/julia-runtest@latest
-      - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v2
-        with:
-          files: lcov.info
-        env:
-          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+

Project.toml

@@ -1,7 +1,7 @@
 name = "RestrictedBoltzmannMachines"
 uuid = "12e6b396-7db5-4506-8cb6-664a4fe1e50e"
 authors = ["Jorge Fernandez-de-Cossio-Diaz <[email protected]>"]
-version = "3.2.0"
+version = "3.2.1"
 
 [deps]
 ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
@@ -21,6 +21,6 @@ DiffRules = "1.8"
 EllipsisNotation = "1"
 FillArrays = "0.12, 0.13, 1"
 LogExpFunctions = "0.3"
-SpecialFunctions = "2"
 Optimisers = "0.2"
+SpecialFunctions = "2"
 julia = "1.7"

README.md

@@ -1,13 +1,8 @@
 # RestrictedBoltzmannMachines Julia package
 
-[![License](https://img.shields.io/badge/license-MIT-green.svg)](https://github.com/cossio/RestrictedBoltzmannMachines.jl/blob/master/LICENSE.md)
 [![](https://img.shields.io/badge/docs-stable-blue.svg)](https://cossio.github.io/RestrictedBoltzmannMachines.jl/stable)
-[![](https://img.shields.io/badge/docs-dev-blue.svg)](https://cossio.github.io/RestrictedBoltzmannMachines.jl/dev)
-![](https://github.com/cossio/RestrictedBoltzmannMachines.jl/workflows/CI/badge.svg)
-[![codecov](https://codecov.io/gh/cossio/RestrictedBoltzmannMachines.jl/branch/master/graph/badge.svg?token=O5P8LQTVF3)](https://codecov.io/gh/cossio/RestrictedBoltzmannMachines.jl)
 
 Train and sample [Restricted Boltzmann machines](https://en.wikipedia.org/wiki/Restricted_Boltzmann_machine) in Julia.
-See the [Documentation](https://cossio.github.io/RestrictedBoltzmannMachines.jl/stable) for details.
 
 ## Installation
 

example/frozen_weights.jl

@@ -0,0 +1,3 @@
+using RestrictedBoltzmannMachines: RBM, pcd!, Binary
+
+rbm = RBM(Binary(; θ=zeros(5)), Binary(; θ=zeros(3)), randn(5,3))

test/Project.toml

@@ -1,4 +1,5 @@
 [deps]
+Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 EllipsisNotation = "da5c29d0-fa7d-589e-88eb-ea29b0a81949"
@@ -19,4 +20,5 @@ ValueHistories = "98cad3c8-aec3-5f06-8e41-884608649ab7"
 Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [compat]
+Aqua = "0.6"
 Distributions = "≥ 0.25"

test/aqua.jl

@@ -0,0 +1,12 @@
+import Aqua
+import RestrictedBoltzmannMachines
+
+using Test: @testset
+
+@testset "aqua" begin
+    Aqua.test_all(
+        RestrictedBoltzmannMachines;
+        stale_deps=(ignore=[:DiffRules],),
+        ambiguities=(recursive=false, exclude=[reshape])
+    )
+end

test/runtests.jl

@@ -1,22 +1,24 @@
 using SafeTestsets: @safetestset
 
-@time @safetestset "util" begin include("util.jl") end
-@time @safetestset "linalg" begin include("linalg.jl") end
-@time @safetestset "onehot" begin include("onehot.jl") end
-@time @safetestset "rbm" begin include("rbm.jl") end
-@time @safetestset "layers" begin include("layers.jl") end
-@time @safetestset "pseudolikelihood" begin include("pseudolikelihood.jl") end
-#@time @safetestset "minibatches" begin include("minibatches.jl") end
-@time @safetestset "infinite_minibatches" begin include("infinite_minibatches.jl") end
-@time @safetestset "initialization" begin include("initialization.jl") end
-@time @safetestset "regularize" begin include("regularize.jl") end
-@time @safetestset "truncnorm" begin include("truncnorm.jl") end
-@time @safetestset "optim" begin include("optim.jl") end
-@time @safetestset "partition" begin include("partition.jl") end
-@time @safetestset "metropolis" begin include("metropolis.jl") end
+module util_tests include("util.jl") end
+module linalg_tests include("linalg.jl") end
+module onehot_tests include("onehot.jl") end
+module rbm_tests include("rbm.jl") end
+module layers_tests include("layers.jl") end
+module pseudolikelihood_tests include("pseudolikelihood.jl") end
+# module minibatches include("minibatches.jl") end
+module infinite_minibatches_tests include("infinite_minibatches.jl") end
+module initialization_tests include("initialization.jl") end
+module regularize_tests include("regularize.jl") end
+module truncnorm_tests include("truncnorm.jl") end
+module optim_tests include("optim.jl") end
+module partition_tests include("partition.jl") end
+module metropolis_tests include("metropolis.jl") end
 
-@time @safetestset "zerosum" begin include("gauge/zerosum.jl") end
-@time @safetestset "rescale_hidden" begin include("gauge/rescale_hidden.jl") end
-@time @safetestset "pcd" begin include("pcd.jl") end
+module zerosum_tests include("gauge/zerosum.jl") end
+module rescale_hidden_tests include("gauge/rescale_hidden.jl") end
+module pcd_tests include("pcd.jl") end
 
 module shift_fields_tests include("shift_fields.jl") end
+
+module aqua_tests include("aqua.jl") end

test/util.jl

@@ -1,6 +1,6 @@
 import Statistics
 import RestrictedBoltzmannMachines as RBMs
-using Test: @test, @testset, @inferred
+using Test: @test, @testset, @inferred, @test_throws
 using Statistics: mean, var, cov
 using LinearAlgebra: dot
 using EllipsisNotation: (..)