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update deprecated binom_test #106

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update deprecated binom_test

update deprecated binom_test #106

Workflow file for this run

.github/workflows/auto_formatting_tests_and_coverage.yml at 081c4e3
name: (Auto) Tests
on:
push:
branches:
- master
- main
pull_request:
branches:
- main
- master
# Run tests every week on sundays
schedule:
- cron: "0 0 * * 0"
jobs:
# Job (1): Run testing in parallel against multiples OSs and Python versions
test:
name: Test
runs-on: ${{ matrix.os }}
# Determines whether the entire workflow should pass/fail based on parallel jobs
continue-on-error: ${{ matrix.experimental }}
defaults:
# This ensures each step gets properly configured bash shell for conda commands to work
run:
shell: bash -l {0}
strategy:
fail-fast: false
matrix:
# OSs to test
os: [ubuntu-latest, macos-latest]
# Python versions to test
python-version: [3.8, 3.9, '3.10', 3.11]
# By default everything should pass for the workflow to pass
experimental: [false]
include:
# Windows sometimes fails to install due to dependency changes, but eventually sort themselves out. So let these tests fail
- os: windows-latest
python-version: 3.8
experimental: true
- os: windows-latest
python-version: 3.9
experimental: true
- os: windows-latest
python-version: '3.10'
experimental: true
- os: windows-latest
python-version: 3.11
experimental: true
steps:
# Step up miniconda
- name: Download and setup Miniconda
uses: conda-incubator/setup-miniconda@v2
with:
miniconda-version: "latest"
python-version: ${{ matrix.python-version }}
# Check out latest code on github
- name: Checkout Code
uses: actions/checkout@v2
# Install common sci-py packages via conda as well as testing packages and requirements
# TODO: unpin pandas version when deepdish adds support for 1.2: https://github.com/uchicago-cs/deepdish/issues/45
- name: Install Dependencies
run: |
conda activate test
conda env list
pip install -r requirements-dev.txt
pip install -r optional-dependencies.txt
# Check code formatting
- name: Check code formatting
run: |
conda activate test
black --version
black --check --diff --verbose nltools
# Actually run the tests with coverage
- name: Run Tests
run: |
conda activate test
coverage run --source=nltools -m pytest -rs
# Send coverage to coveralls.io but waiting on parallelization to finish
# Not using the official github action in the marketplace to upload because it requires a .lcov file, which pytest doesn't generate. It's just easier to use the coveralls python library which does the same thing, but works with pytest.
- name: Upload Coverage
# The coveralls python package has some 422 server issues with uploads from github-actions so try both service providers, for more see:
# https://github.com/TheKevJames/coveralls-python/issues/252
run: coveralls --service=github || coveralls --service=github-actions
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
COVERALLS_FLAG_NAME: $${{ matrix}}
COVERALLS_PARALLEL: true
# Job (2): Send a finish notification to coveralls.io to integrate coverage across parallel tests
coveralls:
name: Coveralls.io Upload
needs: test
runs-on: ubuntu-latest
container: python:3-slim
continue-on-error: true
steps:
- name: Finished
run: |
pip3 install --upgrade coveralls
coveralls --service=github --finish || coveralls --service=github-actions --finish
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
# Job (3): Build docs, but don't deploy. This is effectively another layer of testing because of our sphinx-gallery auto-examples
docs:
name: Build docs and auto-examples
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- name: Download and setup Miniconda
uses: conda-incubator/setup-miniconda@v2
with:
miniconda-version: "latest"
python-version: 3.8
- name: Checkout Code
uses: actions/checkout@v2
- name: Install Dependencies
run: |
conda activate test
conda env list
pip install -r requirements-dev.txt
pip install -r optional-dependencies.txt
- name: Build docs
run: |
cd docs
make clean
make html