stack-clear-basic

A cjr stack based on Clear Linux and swupd.

Installation

To use use this stack with cjr simply run the command

cjr stack:pull https://github.com/container-job-runner/stack-clear-basic.git

or manually clone the repository into your cjr stacks directory.

Description

This stack creates a non-root user with matching user id and group id as the host user, and uses swupd to install basic support for any subset of the following:

1. Languages
   • c, c++
   • Fortran
   • Python 3
   • Julia
   • R
   • latex
2. Libraries
   • Matplotlib
   • BLAS, LAPACK
   • OPENMPI
   • X11
3. dev environments
   • Jupyter notebook, JupyterLab
   • Theia
   • vim, git, vim, emacs, tmux
4. Additional Software
   • spack
   • tigervnc
   • slurm
   • sshd

Configurations for Jupyter and Theia are respectively stored the directories config/jupyter and config/theia which are bound to ~/.jupyter and ~/.theia in the container.

Customization

By default this stack does not install any dependencies. By editing the args in config.yml and setting fields to TRUE you can enable any of the items listed above. After changing the params you will need to rebuild the stack (e.g. cjr stack:build stack-clear-basic)

Additional dependencies can be installed by modifying the files

• build/scripts/root/install-extra.sh
• build/scripts/user/install-extra.sh

To modify the package install process, modify the files

• build/scripts/root/install.sh
• build/scripts/user/install.sh

Profiles: This stack contains the following profiles:

• all : installs everything.
• reference: used to build official cjr clearlinux-sc image
• LANGUAGE-IDE where LANGUAGE can be either 'fortran', 'python', or 'julia' and IDE can be 'jupyter' or 'theia'.
• LANGUAGE where LANGUAGE can be either 'c', 'fortran', 'python', 'julia', or 'octave'

Theia Plugins: Additional plugins can be installed by adding .vsix extension files to the directory config/theia/plugins. Note that Theia does not yet support all vs code extensions correctly, especially the latest versions. Several recommended extensions and their versions are:

• Python: vscode-python, version 2019.11.50794.
• Julia: julia-vscode, version 0.15.40.
• C/C++: vscode-cpptools, version 0.28.3.
• Fortran: Modern Fortran, version 2.2.1. (Requires vscode-cpptools)

Container User Settings: Finally, the container user's username, password, and sudo privileges can be modified by adjusting the user args in config.yml