run conda_r_skeleton_helper

conda-forge · Jul 10, 2024 · 390bc39 · 390bc39
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diff --git a/recipes/r-modeva/bld.bat b/recipes/r-modeva/bld.bat
@@ -0,0 +1,2 @@
+"%R%" CMD INSTALL --build . %R_ARGS%
+IF %ERRORLEVEL% NEQ 0 exit /B 1
diff --git a/recipes/r-modeva/build.sh b/recipes/r-modeva/build.sh
@@ -0,0 +1,3 @@
+#!/bin/bash
+export DISABLE_AUTOBREW=1
+${R} CMD INSTALL --build . ${R_ARGS}
diff --git a/recipes/r-modeva/meta.yaml b/recipes/r-modeva/meta.yaml
@@ -1,47 +1,50 @@
-{% set version = "3.17" %}
-{% set name = "modeva" %}
+{% set version = '3.17' %}
+{% set posix = 'm2-' if win else '' %}
+{% set native = 'm2w64-' if win else '' %}
 
 package:
-  name: r-{{ name }}
-  version: '{{ version }}'
+  name: r-modeva
+  version: {{ version|replace("-", "_") }}
 
 source:
-  url: https://cran.r-project.org/src/contrib/modEvA_{{ version }}.tar.gz
+  url:
+    - {{ cran_mirror }}/src/contrib/modEvA_{{ version }}.tar.gz
+    - {{ cran_mirror }}/src/contrib/Archive/modEvA/modEvA_{{ version }}.tar.gz
   sha256: f27ba3da0bbbb61d57e188cbfdf1804d412b8ba256ddfa5fef7da261e5d8f3b0
 
 build:
+  merge_build_host: True  # [win]
   number: 0
   noarch: generic
-  merge_build_host: true  # [win]
-  script: R CMD INSTALL --build .
   rpaths:
     - lib/R/lib/
     - lib/
 
 requirements:
+  build:
+    - {{ posix }}zip               # [win]
+    - cross-r-base {{ r_base }}    # [build_platform != target_platform]
   host:
     - r-base
-    - r-terra >1.5-50
+    - r-terra >1.5_50
   run:
     - r-base
-    - r-terra >1.5-50
+    - r-terra >1.5_50
 
 test:
   commands:
-    - $R -e "library('modEvA')"  # [not win]
+    - $R -e "library('modEvA')"           # [not win]
     - "\"%R%\" -e \"library('modEvA')\""  # [win]
 
 about:
   home: http://modeva.r-forge.r-project.org/
-  summary: |
-          Analyses species distribution models and evaluates their performance.
-          It includes functions for variation partitioning, extracting variable importance,
-          computing several metrics of model discrimination and calibration performance,
-          optimizing prediction thresholds based on a number of criteria,
-          performing multivariate environmental similarity surface (MESS) analysis,
-          and displaying various analytical plots.
-          Initially described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
   license: GPL-3.0-only
+  summary: Analyses species distribution models and evaluates their performance. It includes
+    functions for variation partitioning, extracting variable importance, computing
+    several metrics of model discrimination and calibration performance, optimizing
+    prediction thresholds based on a number of criteria, performing multivariate environmental
+    similarity surface (MESS) analysis, and displaying various analytical plots. Initially
+    described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
   license_family: GPL3
   license_file:
     - '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
@@ -50,3 +53,22 @@ extra:
   recipe-maintainers:
     - conda-forge/r
     - ocefpaf
+
+# Package: modEvA
+# Type: Package
+# Title: Model Evaluation and Analysis
+# Version: 3.17
+# Date: 2024-06-06
+# Author: Barbosa A.M., Brown J.A., Jimenez-Valverde A., Real R.
+# Maintainer: A. Marcia Barbosa <[email protected]>
+# Imports: graphics, grDevices, stats, methods, terra (> 1.5-50)
+# Description: Analyses species distribution models and evaluates their performance. It includes functions for variation partitioning, extracting variable importance, computing several metrics of model discrimination and calibration performance, optimizing prediction thresholds based on a number of criteria, performing multivariate environmental similarity surface (MESS) analysis, and displaying various analytical plots. Initially described in Barbosa et al. (2013) <doi:10.1111/ddi.12100>.
+# LazyLoad: yes
+# LazyData: yes
+# License: GPL-3
+# URL: http://modeva.r-forge.r-project.org/
+# NeedsCompilation: no
+# Packaged: 2024-06-06 10:58:51 UTC; marcia
+# Depends: R (>= 2.10)
+# Repository: CRAN
+# Date/Publication: 2024-06-06 11:50:07 UTC
diff --git a/recipes/r-rangebuilder/bld.bat b/recipes/r-rangebuilder/bld.bat
@@ -0,0 +1,2 @@
+"%R%" CMD INSTALL --build . %R_ARGS%
+IF %ERRORLEVEL% NEQ 0 exit /B 1
diff --git a/recipes/r-rangebuilder/build.sh b/recipes/r-rangebuilder/build.sh
@@ -0,0 +1,3 @@
+#!/bin/bash
+export DISABLE_AUTOBREW=1
+${R} CMD INSTALL --build . ${R_ARGS}
diff --git a/recipes/r-rangebuilder/meta.yaml b/recipes/r-rangebuilder/meta.yaml
@@ -1,38 +1,41 @@
-{% set version = "2.1" %}
-{% set name = "rangebuilder" %}
-{% set posix = "m2-" if win else "" %}
-{% set native = "m2w64-" if win else "" %}
+{% set version = '2.1' %}
+{% set posix = 'm2-' if win else '' %}
+{% set native = 'm2w64-' if win else '' %}
 
 package:
-  name: r-{{ name }}
-  version: '{{ version }}'
+  name: r-rangebuilder
+  version: {{ version|replace("-", "_") }}
 
 source:
-  url: https://cran.r-project.org/src/contrib/rangeBuilder_{{ version }}.tar.gz
+  url:
+    - {{ cran_mirror }}/src/contrib/rangeBuilder_{{ version }}.tar.gz
+    - {{ cran_mirror }}/src/contrib/Archive/rangeBuilder/rangeBuilder_{{ version }}.tar.gz
   sha256: fceee76e8ee2841261a49b4a36c8966224913def895acd3a15d42dee6acd02e5
 
 build:
+  merge_build_host: True  # [win]
   number: 0
-  merge_build_host: true  # [win]
-  script: R CMD INSTALL --build .
   rpaths:
     - lib/R/lib/
     - lib/
 
 requirements:
   build:
-    - cross-r-base {{ r_base }}      # [build_platform != target_platform]
-    - autoconf                       # [not win]
-    - "{{ compiler('c') }}"          # [not win]
-    - "{{ stdlib('c') }}"            # [not win]
-    - "{{ compiler('m2w64_c') }}"    # [win]
-    - "{{ stdlib('m2w64_c') }}"    # [win]
-    - "{{ compiler('cxx') }}"        # [not win]
-    - "{{ compiler('m2w64_cxx') }}"  # [win]
-    - posix                          # [win]
+    - {{ compiler('c') }}              # [not win]
+    - {{ stdlib('c') }}                # [not win]
+    - {{ compiler('m2w64_c') }}        # [win]
+    - {{ stdlib('m2w64_c') }}          # [win]
+    - {{ compiler('cxx') }}            # [not win]
+    - {{ compiler('m2w64_cxx') }}      # [win]
+    - {{ posix }}filesystem        # [win]
+    - {{ posix }}make
+    - {{ posix }}sed               # [win]
+    - {{ posix }}coreutils         # [win]
+    - {{ posix }}zip               # [win]
+    - cross-r-base {{ r_base }}    # [build_platform != target_platform]
   host:
     - r-base
-    - r-Rcpp >=0.12.9
+    - r-rcpp >=0.12.9
     - r-alphahull >=2.5
     - r-pbapply
     - r-rnaturalearth
@@ -42,7 +45,8 @@ requirements:
     - r-units
   run:
     - r-base
-    - r-Rcpp >=0.12.9
+    - {{ native }}gcc-libs         # [win]
+    - r-rcpp >=0.12.9
     - r-alphahull >=2.5
     - r-pbapply
     - r-rnaturalearth
@@ -53,18 +57,42 @@ requirements:
 
 test:
   commands:
-    - $R -e "library('rangeBuilder')"  # [not win]
+    - $R -e "library('rangeBuilder')"           # [not win]
     - "\"%R%\" -e \"library('rangeBuilder')\""  # [win]
 
 about:
   home: https://github.com/ptitle/rangeBuilder
-  summary: Provides tools for filtering occurrence records, generating alpha-hull-derived range polygons and mapping species distributions.
   license: GPL-3.0-or-later
+  summary: Provides tools for filtering occurrence records, generating alpha-hull-derived range
+    polygons and mapping species distributions.
   license_family: GPL3
   license_file:
-    - {{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3
+    - '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
 
 extra:
   recipe-maintainers:
     - conda-forge/r
-    - ocefpaf
+    - ocefpaf
+
+# Package: rangeBuilder
+# Type: Package
+# Title: Occurrence Filtering, Geographic Standardization and Generation of Species Range Polygons
+# Version: 2.1
+# Authors@R: person("Pascal", "Title", email = "[email protected]", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6316-0736"))
+# Imports: alphahull (>= 2.5), stringi, sf, terra, pbapply, units, rnaturalearth, methods, Rcpp (>= 0.12.9)
+# Depends: R (>= 3.5.0)
+# Description: Provides tools for filtering occurrence records, generating alpha-hull-derived range polygons and mapping species distributions.
+# License: GPL (>= 3)
+# URL: https://github.com/ptitle/rangeBuilder
+# BugReports: https://github.com/ptitle/rangeBuilder/issues
+# NeedsCompilation: yes
+# LinkingTo: Rcpp
+# LazyData: true
+# Encoding: UTF-8
+# RoxygenNote: 7.2.3
+# ByteCompile: true
+# Packaged: 2023-03-03 14:57:49 UTC; pascaltitle
+# Author: Pascal Title [aut, cre] (<https://orcid.org/0000-0002-6316-0736>)
+# Maintainer: Pascal Title <[email protected]>
+# Repository: CRAN
+# Date/Publication: 2023-03-03 15:40:02 UTC
diff --git a/recipes/r-volumodel/bld.bat b/recipes/r-volumodel/bld.bat
@@ -0,0 +1,2 @@
+"%R%" CMD INSTALL --build . %R_ARGS%
+IF %ERRORLEVEL% NEQ 0 exit /B 1
diff --git a/recipes/r-volumodel/build.sh b/recipes/r-volumodel/build.sh
@@ -0,0 +1,3 @@
+#!/bin/bash
+export DISABLE_AUTOBREW=1
+${R} CMD INSTALL --build . ${R_ARGS}
diff --git a/recipes/r-volumodel/meta.yaml b/recipes/r-volumodel/meta.yaml
@@ -1,26 +1,29 @@
-{% set version = "0.2.1" %}
-{% set name = "volumodel" %}
+{% set version = '0.2.1' %}
+{% set posix = 'm2-' if win else '' %}
+{% set native = 'm2w64-' if win else '' %}
 
 package:
-  name: r-{{ name }}
-  version: '{{ version }}'
+  name: r-volumodel
+  version: {{ version|replace("-", "_") }}
 
 source:
   url:
-    - https://cran.r-project.org/src/contrib/voluModel_{{ version }}.tar.gz
-    - https://cran.r-project.org/src/contrib/Archive/voluModel/voluModel_{{ version }}.tar.gz
+    - {{ cran_mirror }}/src/contrib/voluModel_{{ version }}.tar.gz
+    - {{ cran_mirror }}/src/contrib/Archive/voluModel/voluModel_{{ version }}.tar.gz
   sha256: 8fd558baa1d8ec5c31710693ee9576100cc4beb0cbd5b30750913f2df57a78ce
 
 build:
+  merge_build_host: True  # [win]
   number: 0
   noarch: generic
-  merge_build_host: true  # [win]
-  script: R CMD INSTALL --build .
   rpaths:
     - lib/R/lib/
     - lib/
 
 requirements:
+  build:
+    - {{ posix }}zip               # [win]
+    - cross-r-base {{ r_base }}    # [build_platform != target_platform]
   host:
     - r-base
     - r-dplyr
@@ -31,7 +34,7 @@ requirements:
     - r-rangebuilder >=2.0
     - r-sf
     - r-terra
-    - r-viridisLite
+    - r-viridislite
   run:
     - r-base
     - r-dplyr
@@ -42,18 +45,27 @@ requirements:
     - r-rangebuilder >=2.0
     - r-sf
     - r-terra
-    - r-viridisLite
+    - r-viridislite
 
 test:
   commands:
-    - $R -e "library('voluModel')"  # [not win]
+    - $R -e "library('voluModel')"           # [not win]
     - "\"%R%\" -e \"library('voluModel')\""  # [win]
 
 about:
   home: https://hannahlowens.github.io/voluModel/
-  summary: Facilitates modeling species' ecological niches and geographic distributions based on occurrences and environments that have a vertical as well as horizontal component, and projecting models into three-dimensional geographic space. Working in three dimensions is useful in an aquatic context when the organisms one wishes to model can be found across a wide range of depths in the water column. The package also contains functions to automatically generate marine training model training regions using machine learning, and interpolate and smooth patchily sampled environmental rasters using
-    thin plate splines. Davis Rabosky AR, Cox CL, Rabosky DL, Title PO, Holmes IA, Feldman A, McGuire JA (2016) <doi:10.1038/ncomms11484>. Nychka D, Furrer R, Paige J, Sain S (2021) <doi:10.5065/D6W957CT>. Pateiro-Lopez B, Rodriguez-Casal A (2022) <https://CRAN.R-project.org/package=alphahull>.
   license: GPL-3.0-only
+  summary: Facilitates modeling species' ecological niches and geographic distributions based
+    on occurrences and environments that have a vertical as well as horizontal component,
+    and projecting models into three-dimensional geographic space. Working in three
+    dimensions is useful in an aquatic context when the organisms one wishes to model
+    can be found across a wide range of depths in the water column. The package also
+    contains functions to automatically generate marine training model training regions
+    using machine learning, and interpolate and smooth patchily sampled environmental
+    rasters using thin plate splines. Davis Rabosky AR, Cox CL, Rabosky DL, Title PO,
+    Holmes IA, Feldman A, McGuire JA (2016) <doi:10.1038/ncomms11484>. Nychka D, Furrer
+    R, Paige J, Sain S (2021) <doi:10.5065/D6W957CT>. Pateiro-Lopez B, Rodriguez-Casal
+    A (2022) <https://CRAN.R-project.org/package=alphahull>.
   license_family: GPL3
   license_file:
     - '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
@@ -62,3 +74,25 @@ extra:
   recipe-maintainers:
     - conda-forge/r
     - ocefpaf
+
+# Package: voluModel
+# Title: Modeling Species Distributions in Three Dimensions
+# Version: 0.2.1
+# Authors@R: c(person(given = "Hannah L.", family = "Owens", role = c("aut", "cre"), email = "[email protected]", comment = c(ORCID = "0000-0003-0071-1745")), person(given = "Carsten", family = "Rahbek",,, role="aut", comment = c(ORCID = "0000-0003-4585-0300")))
+# Maintainer: Hannah L. Owens <[email protected]>
+# Description: Facilitates modeling species' ecological niches and geographic distributions based on occurrences and environments that have a vertical as well as horizontal component, and projecting models into three-dimensional geographic space. Working in three dimensions is useful in an aquatic context when the organisms one wishes to model can be found across a wide range of depths in the water column. The package also contains functions to automatically generate marine training model training regions using machine learning, and interpolate and smooth patchily sampled environmental rasters using thin plate splines. Davis Rabosky AR, Cox CL, Rabosky DL, Title PO, Holmes IA, Feldman A, McGuire JA (2016) <doi:10.1038/ncomms11484>. Nychka D, Furrer R, Paige J, Sain S (2021) <doi:10.5065/D6W957CT>. Pateiro-Lopez B, Rodriguez-Casal A (2022) <https://CRAN.R-project.org/package=alphahull>.
+# License: GPL-3
+# URL: https://hannahlowens.github.io/voluModel/
+# BugReports: https://github.com/hannahlowens/voluModel/issues
+# Encoding: UTF-8
+# Depends: R (>= 4.0.0)
+# Imports: dplyr, fields, ggplot2, ggtext, grDevices, methods, modEvA, rangeBuilder (>= 2.0), terra, viridisLite, sf
+# Suggests: testthat (>= 3.0.0), nlme, knitr, covr, gridExtra, lattice, rmarkdown, rnaturalearth, rnaturalearthdata, tibble
+# VignetteBuilder: knitr
+# RoxygenNote: 7.3.0
+# Config/testthat/edition: 3
+# NeedsCompilation: no
+# Packaged: 2024-01-24 14:23:44 UTC; HannahOwens
+# Author: Hannah L. Owens [aut, cre] (<https://orcid.org/0000-0003-0071-1745>), Carsten Rahbek [aut] (<https://orcid.org/0000-0003-4585-0300>)
+# Repository: CRAN
+# Date/Publication: 2024-01-24 14:50:06 UTC
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		"%R%" CMD INSTALL --build . %R_ARGS%
		IF %ERRORLEVEL% NEQ 0 exit /B 1