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Add test executing compound document with absolute identifiers.
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Peter Amstutz
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Jul 21, 2017
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,125 @@ | ||
| { | ||
| "cwlVersion": "v1.0", | ||
| "$graph": [ | ||
| { | ||
| "class": "Workflow", | ||
| "doc": "Reverse the lines in a document, then sort those lines.", | ||
| "hints": [ | ||
| { | ||
| "class": "DockerRequirement", | ||
| "dockerPull": "debian:8" | ||
| } | ||
| ], | ||
| "inputs": [ | ||
| { | ||
| "type": "File", | ||
| "doc": "The input file to be processed.", | ||
| "id": "#main/input" | ||
| }, | ||
| { | ||
| "type": "boolean", | ||
| "default": true, | ||
| "doc": "If true, reverse (decending) sort", | ||
| "id": "#main/reverse_sort" | ||
| } | ||
| ], | ||
| "outputs": [ | ||
| { | ||
| "type": "File", | ||
| "outputSource": "#main/sorted/output", | ||
| "doc": "The output with the lines reversed and sorted.", | ||
| "id": "#main/output" | ||
| } | ||
| ], | ||
| "steps": [ | ||
| { | ||
| "in": [ | ||
| { | ||
| "source": "#main/input", | ||
| "id": "#main/rev/input" | ||
| } | ||
| ], | ||
| "out": [ | ||
| "#main/rev/output" | ||
| ], | ||
| "run": "#revtool.cwl", | ||
| "id": "#main/rev" | ||
| }, | ||
| { | ||
| "in": [ | ||
| { | ||
| "source": "#main/rev/output", | ||
| "id": "#main/sorted/input" | ||
| }, | ||
| { | ||
| "source": "#main/reverse_sort", | ||
| "id": "#main/sorted/reverse" | ||
| } | ||
| ], | ||
| "out": [ | ||
| "#main/sorted/output" | ||
| ], | ||
| "run": "#sorttool.cwl", | ||
| "id": "#main/sorted" | ||
| } | ||
| ], | ||
| "id": "#main" | ||
| }, | ||
| { | ||
| "class": "CommandLineTool", | ||
| "doc": "Reverse each line using the `rev` command", | ||
| "inputs": [ | ||
| { | ||
| "type": "File", | ||
| "inputBinding": {}, | ||
| "id": "#revtool.cwl/input" | ||
| } | ||
| ], | ||
| "outputs": [ | ||
| { | ||
| "type": "File", | ||
| "outputBinding": { | ||
| "glob": "output.txt" | ||
| }, | ||
| "id": "#revtool.cwl/output" | ||
| } | ||
| ], | ||
| "baseCommand": "rev", | ||
| "stdout": "output.txt", | ||
| "id": "#revtool.cwl" | ||
| }, | ||
| { | ||
| "class": "CommandLineTool", | ||
| "doc": "Sort lines using the `sort` command", | ||
| "inputs": [ | ||
| { | ||
| "id": "#sorttool.cwl/reverse", | ||
| "type": "boolean", | ||
| "inputBinding": { | ||
| "position": 1, | ||
| "prefix": "--reverse" | ||
| } | ||
| }, | ||
| { | ||
| "id": "#sorttool.cwl/input", | ||
| "type": "File", | ||
| "inputBinding": { | ||
| "position": 2 | ||
| } | ||
| } | ||
| ], | ||
| "outputs": [ | ||
| { | ||
| "id": "#sorttool.cwl/output", | ||
| "type": "File", | ||
| "outputBinding": { | ||
| "glob": "output.txt" | ||
| } | ||
| } | ||
| ], | ||
| "baseCommand": "sort", | ||
| "stdout": "output.txt", | ||
| "id": "#sorttool.cwl" | ||
| } | ||
| ] | ||
| } |