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Support for sub workflows #103

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Fix missing global
manabuishii authored Sep 29, 2021

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commit 8a130c905b0bd086bc3fdf06e4fa685c8ca6b1a7
1 change: 1 addition & 0 deletions cwl_utils/docker_extract.py
Original file line number Diff line number Diff line change
@@ -87,6 +87,7 @@ def traverse(process: ProcessType) -> Iterator[cwl.DockerRequirement]:

def get_process_from_step(step: cwl.WorkflowStep) -> ProcessType:
"""Return the process for this step, loading it if necessary."""
global WorkflowDir
if isinstance(step.run, str):
return cast(ProcessType, cwl.load_document(WorkflowDir+step.run))
return cast(ProcessType, step.run)