ENH: fleshing out selecting alignments #53
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[CHANGED] modified both hg and git ignore files
[FIXED] any alignment record whose segment overlaps the query
coordinates is now returned
[CHANGED] it's possible a set of coordinates can map to multiple
alignment records. We yield these one at a time.
[NEW] allow selecting just a subset of an alignment, using the
GapPositions class to reduce the genome sequence query to only
that required for the final result.
[NEW] multiple extensive tests of selecting subsets of alignment.
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