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Enhanced performance and partial homolog seq export feature #33

Merged
merged 11 commits into from
Nov 16, 2023
Merged

Enhanced performance and partial homolog seq export feature #33

merged 11 commits into from
Nov 16, 2023

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GavinHuttley
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[CHANGED] remove the compress_it, decompress_it and put replacement
     apps (elt_compress_it, elt_decompress_it) in ensembl_lite.util

[NEW] added blosc2 as dependency

[NEW] added standalone blosc compression apps, blosc_compress_it
     and blosc_decompress_it
[FIXED] one of the genome files contains multiple contigs, so reading a
    single sequence led to errors

[CHANGED] use cogent3's parallel routines for handling loading and compressing
    sequences (unsync was failing with a list of lists)
[NEW] add some simplified tests of this
[NEW] the sequence name is species-<gene id>
[NEW] file names are arbitrary, at present
@GavinHuttley GavinHuttley merged commit 526224a into cogent3:develop Nov 16, 2023
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