Skip to content

cogent3/cogent3_and_plotly

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

9 Commits
 
 
 
 
 
 
 
 

Repository files navigation

Decoding genomes with cogent3 + Plotly

Source code demonsytrating the integration of Plotly visualisation capabilities into cogent3 that was usded to produce the figures in this blogpost.

Installation instructions

To run the notebook you need a Python installation. We expect most readers to be familiar with conda. We suggest you create a conda environment and activate it

$ conda create -n c3demo python=3.12
$ conda activate c3demo

Then install cogent3 with plotly dependencies as

$ pip install "cogent3[extra]" ipykernel nbformat jupyter

We recommend using VS Code with the Python and Jupyter extensions for running the notebook.

Releases

No releases published

Packages

No packages published