refining the code

cns-iu · Jul 26, 2024 · ab78908 · ab78908
1 parent ef35009
commit ab78908
Show file tree

Hide file tree

Showing 5 changed files with 72 additions and 50,798 deletions.
diff --git a/FTU-workflow.ipynb b/FTU-workflow.ipynb
@@ -82,7 +82,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
+   "execution_count": 1,
    "id": "0147567f",
    "metadata": {},
    "outputs": [],
@@ -96,16 +96,16 @@
   },
   {
    "cell_type": "markdown",
-   "id": "530a5dc6",
+   "id": "7fc114eb",
    "metadata": {},
    "source": [
     "### Load Reference files"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": null,
-   "id": "1b567d2e",
+   "execution_count": 2,
+   "id": "2223a8f3",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -142,8 +142,8 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
-   "id": "ae75cab4",
+   "execution_count": 3,
+   "id": "5b490783",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -164,10 +164,26 @@
   },
   {
    "cell_type": "code",
-   "execution_count": null,
-   "id": "8f7d71d7",
-   "metadata": {},
-   "outputs": [],
+   "execution_count": 4,
+   "id": "84b9e78b",
+   "metadata": {},
+   "outputs": [
+    {
+     "ename": "KeyError",
+     "evalue": "\"['Unnamed: 8', 'Unnamed: 9', 'Unnamed: 10', 'Unnamed: 11', 'Unnamed: 12', 'Unnamed: 13', 'Unnamed: 14'] not found in axis\"",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
+      "\u001b[1;31mKeyError\u001b[0m                                  Traceback (most recent call last)",
+      "Cell \u001b[1;32mIn[4], line 1\u001b[0m\n\u001b[1;32m----> 1\u001b[0m ftu_cell_count \u001b[38;5;241m=\u001b[39m ftu_cell_count\u001b[38;5;241m.\u001b[39mdrop(columns\u001b[38;5;241m=\u001b[39m[\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mUnnamed: 6\u001b[39m\u001b[38;5;124m'\u001b[39m,\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mUnnamed: 7\u001b[39m\u001b[38;5;124m'\u001b[39m,\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mUnnamed: 8\u001b[39m\u001b[38;5;124m'\u001b[39m,\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mUnnamed: 9\u001b[39m\u001b[38;5;124m'\u001b[39m,\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mUnnamed: 10\u001b[39m\u001b[38;5;124m'\u001b[39m,\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mUnnamed: 11\u001b[39m\u001b[38;5;124m'\u001b[39m,\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mUnnamed: 12\u001b[39m\u001b[38;5;124m'\u001b[39m,\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mUnnamed: 13\u001b[39m\u001b[38;5;124m'\u001b[39m,\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mUnnamed: 14\u001b[39m\u001b[38;5;124m'\u001b[39m], axis \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mFalse\u001b[39;00m)\n\u001b[0;32m      3\u001b[0m \u001b[38;5;66;03m# Rename 'CT ID in CL' to 'CL_ID' for consistency\u001b[39;00m\n\u001b[0;32m      4\u001b[0m ftu_cell_count \u001b[38;5;241m=\u001b[39m ftu_cell_count\u001b[38;5;241m.\u001b[39mrename(columns\u001b[38;5;241m=\u001b[39m{\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mCT ID in CL\u001b[39m\u001b[38;5;124m'\u001b[39m: \u001b[38;5;124m'\u001b[39m\u001b[38;5;124mCL_ID\u001b[39m\u001b[38;5;124m'\u001b[39m})\n",
+      "File \u001b[1;32m~\\AppData\\Roaming\\Python\\Python311\\site-packages\\pandas\\core\\frame.py:5581\u001b[0m, in \u001b[0;36mDataFrame.drop\u001b[1;34m(self, labels, axis, index, columns, level, inplace, errors)\u001b[0m\n\u001b[0;32m   5433\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mdrop\u001b[39m(\n\u001b[0;32m   5434\u001b[0m     \u001b[38;5;28mself\u001b[39m,\n\u001b[0;32m   5435\u001b[0m     labels: IndexLabel \u001b[38;5;241m|\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m \u001b[38;5;241m=\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m,\n\u001b[1;32m   (...)\u001b[0m\n\u001b[0;32m   5442\u001b[0m     errors: IgnoreRaise \u001b[38;5;241m=\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mraise\u001b[39m\u001b[38;5;124m\"\u001b[39m,\n\u001b[0;32m   5443\u001b[0m ) \u001b[38;5;241m-\u001b[39m\u001b[38;5;241m>\u001b[39m DataFrame \u001b[38;5;241m|\u001b[39m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[0;32m   5444\u001b[0m \u001b[38;5;250m    \u001b[39m\u001b[38;5;124;03m\"\"\"\u001b[39;00m\n\u001b[0;32m   5445\u001b[0m \u001b[38;5;124;03m    Drop specified labels from rows or columns.\u001b[39;00m\n\u001b[0;32m   5446\u001b[0m \n\u001b[1;32m   (...)\u001b[0m\n\u001b[0;32m   5579\u001b[0m \u001b[38;5;124;03m            weight  1.0     0.8\u001b[39;00m\n\u001b[0;32m   5580\u001b[0m \u001b[38;5;124;03m    \"\"\"\u001b[39;00m\n\u001b[1;32m-> 5581\u001b[0m     \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28msuper\u001b[39m()\u001b[38;5;241m.\u001b[39mdrop(\n\u001b[0;32m   5582\u001b[0m         labels\u001b[38;5;241m=\u001b[39mlabels,\n\u001b[0;32m   5583\u001b[0m         axis\u001b[38;5;241m=\u001b[39maxis,\n\u001b[0;32m   5584\u001b[0m         index\u001b[38;5;241m=\u001b[39mindex,\n\u001b[0;32m   5585\u001b[0m         columns\u001b[38;5;241m=\u001b[39mcolumns,\n\u001b[0;32m   5586\u001b[0m         level\u001b[38;5;241m=\u001b[39mlevel,\n\u001b[0;32m   5587\u001b[0m         inplace\u001b[38;5;241m=\u001b[39minplace,\n\u001b[0;32m   5588\u001b[0m         errors\u001b[38;5;241m=\u001b[39merrors,\n\u001b[0;32m   5589\u001b[0m     )\n",
+      "File \u001b[1;32m~\\AppData\\Roaming\\Python\\Python311\\site-packages\\pandas\\core\\generic.py:4788\u001b[0m, in \u001b[0;36mNDFrame.drop\u001b[1;34m(self, labels, axis, index, columns, level, inplace, errors)\u001b[0m\n\u001b[0;32m   4786\u001b[0m \u001b[38;5;28;01mfor\u001b[39;00m axis, labels \u001b[38;5;129;01min\u001b[39;00m axes\u001b[38;5;241m.\u001b[39mitems():\n\u001b[0;32m   4787\u001b[0m     \u001b[38;5;28;01mif\u001b[39;00m labels \u001b[38;5;129;01mis\u001b[39;00m \u001b[38;5;129;01mnot\u001b[39;00m \u001b[38;5;28;01mNone\u001b[39;00m:\n\u001b[1;32m-> 4788\u001b[0m         obj \u001b[38;5;241m=\u001b[39m obj\u001b[38;5;241m.\u001b[39m_drop_axis(labels, axis, level\u001b[38;5;241m=\u001b[39mlevel, errors\u001b[38;5;241m=\u001b[39merrors)\n\u001b[0;32m   4790\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m inplace:\n\u001b[0;32m   4791\u001b[0m     \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39m_update_inplace(obj)\n",
+      "File \u001b[1;32m~\\AppData\\Roaming\\Python\\Python311\\site-packages\\pandas\\core\\generic.py:4830\u001b[0m, in \u001b[0;36mNDFrame._drop_axis\u001b[1;34m(self, labels, axis, level, errors, only_slice)\u001b[0m\n\u001b[0;32m   4828\u001b[0m         new_axis \u001b[38;5;241m=\u001b[39m axis\u001b[38;5;241m.\u001b[39mdrop(labels, level\u001b[38;5;241m=\u001b[39mlevel, errors\u001b[38;5;241m=\u001b[39merrors)\n\u001b[0;32m   4829\u001b[0m     \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[1;32m-> 4830\u001b[0m         new_axis \u001b[38;5;241m=\u001b[39m axis\u001b[38;5;241m.\u001b[39mdrop(labels, errors\u001b[38;5;241m=\u001b[39merrors)\n\u001b[0;32m   4831\u001b[0m     indexer \u001b[38;5;241m=\u001b[39m axis\u001b[38;5;241m.\u001b[39mget_indexer(new_axis)\n\u001b[0;32m   4833\u001b[0m \u001b[38;5;66;03m# Case for non-unique axis\u001b[39;00m\n\u001b[0;32m   4834\u001b[0m \u001b[38;5;28;01melse\u001b[39;00m:\n",
+      "File \u001b[1;32m~\\AppData\\Roaming\\Python\\Python311\\site-packages\\pandas\\core\\indexes\\base.py:7070\u001b[0m, in \u001b[0;36mIndex.drop\u001b[1;34m(self, labels, errors)\u001b[0m\n\u001b[0;32m   7068\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m mask\u001b[38;5;241m.\u001b[39many():\n\u001b[0;32m   7069\u001b[0m     \u001b[38;5;28;01mif\u001b[39;00m errors \u001b[38;5;241m!=\u001b[39m \u001b[38;5;124m\"\u001b[39m\u001b[38;5;124mignore\u001b[39m\u001b[38;5;124m\"\u001b[39m:\n\u001b[1;32m-> 7070\u001b[0m         \u001b[38;5;28;01mraise\u001b[39;00m \u001b[38;5;167;01mKeyError\u001b[39;00m(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m\"\u001b[39m\u001b[38;5;132;01m{\u001b[39;00mlabels[mask]\u001b[38;5;241m.\u001b[39mtolist()\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m not found in axis\u001b[39m\u001b[38;5;124m\"\u001b[39m)\n\u001b[0;32m   7071\u001b[0m     indexer \u001b[38;5;241m=\u001b[39m indexer[\u001b[38;5;241m~\u001b[39mmask]\n\u001b[0;32m   7072\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m \u001b[38;5;28mself\u001b[39m\u001b[38;5;241m.\u001b[39mdelete(indexer)\n",
+      "\u001b[1;31mKeyError\u001b[0m: \"['Unnamed: 8', 'Unnamed: 9', 'Unnamed: 10', 'Unnamed: 11', 'Unnamed: 12', 'Unnamed: 13', 'Unnamed: 14'] not found in axis\""
+     ]
+    }
+   ],
    "source": [
     "ftu_cell_count = ftu_cell_count.drop(columns=['Unnamed: 6','Unnamed: 7','Unnamed: 8','Unnamed: 9','Unnamed: 10','Unnamed: 11','Unnamed: 12','Unnamed: 13','Unnamed: 14'], axis = False)\n",
     "\n",
@@ -297,7 +313,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "25e954cd",
+   "id": "f6599e7e",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -447,7 +463,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "a0917d09",
+   "id": "7657f392",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -747,7 +763,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "3409b6d9",
+   "id": "fc279e12",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -765,7 +781,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "7360d58e",
+   "id": "8d230fe1",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -834,7 +850,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "887ce4ec",
+   "id": "d5c1d6a8",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -854,7 +870,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "6d3814b2",
+   "id": "4d7c5d2b",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -937,7 +953,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "0973bbb8",
+   "id": "fe7735ac",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -1089,7 +1105,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "a6c2dbfd",
+   "id": "cd6eb2b7",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -1137,7 +1153,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "fcc16556",
+   "id": "c7711109",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -1158,7 +1174,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "5775ab44",
+   "id": "821f01df",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -1274,7 +1290,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "5e58a80c",
+   "id": "49ce0df3",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -1299,7 +1315,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "b0bab5e5",
+   "id": "5f16cfdd",
    "metadata": {},
    "outputs": [],
    "source": [
@@ -1492,7 +1508,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "47a47733",
+   "id": "6089721e",
    "metadata": {},
    "outputs": [],
    "source": []

diff --git a/Untitled.ipynb b/Untitled.ipynb
@@ -0,0 +1,33 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "3177c891",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.11.5"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}