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code/.ipynb_checkpoints/FTU-workflow-Copy1-checkpoint.ipynb
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output/.ipynb_checkpoints/FTU-CT-AnnTool-info-checkpoint.csv
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,115 @@ | ||
| Organ,FTU Label in Uberon,FTU ID in Uberon,CL_ID,CT Label,azimuth,celltypist,popv | ||
| Kidney,Cortical Collecting Duct,UBERON:0004203,CL:1000715,kidney cortex collecting duct intercalated cell,1,0,0 | ||
| Kidney,Cortical Collecting Duct,UBERON:0004203,CL:4030015,kidney collecting duct alpha-intercalated cell,0,1,0 | ||
| Kidney,Outer Medullary Collecting Duct,UBERON:0004204,CL:1000717,kidney outer medulla collecting duct intercalated cell,1,0,0 | ||
| Kidney,Thick Ascending Limb Of Loop Of Henle,UBERON:0001291,CL:1001033,peritubular capillary endothelial cell,1,1,0 | ||
| Kidney,Descending Limb of Loop of Henle,UBERON:0001289,CL:1001285,vasa recta descending limb cell,1,1,0 | ||
| Kidney,Loop Of Henle Ascending Limb Thin Segment,UBERON:0004193,CL:1001131,vasa recta ascending limb cell,1,1,0 | ||
| Kidney,Nephron,UBERON:0001291,CL:4030009,epithelial cell of proximal tubule segment 1,1,0,0 | ||
| Kidney,Nephron,UBERON:0001291,CL:1000849,kidney distal convoluted tubule epithelial cell,1,1,0 | ||
| Kidney,Nephron,UBERON:0001291,CL:1000768,kidney connecting tubule epithelial cell,1,1,0 | ||
| Kidney,Nephron,UBERON:0001291,CL:1000718,kidney inner medulla collecting duct,1,0,0 | ||
| Kidney,Nephron,UBERON:0001291,CL:1001107,kidney loop of Henle thin ascending limb epithelial cell,1,1,0 | ||
| Kidney,Nephron,UBERON:0001291,CL:1001111,kidney loop of Henle thin descending limb epithelial cell,1,1,0 | ||
| Kidney,Nephron,UBERON:0001291,CL:1001106,kidney loop of Henle thick ascending limb epithelial cell,1,1,0 | ||
| Kidney,Nephron,UBERON:0001291,CL:1000714,kidney cortex collecting duct principal cell,1,0,0 | ||
| Kidney,Nephron,UBERON:0001291,CL:1000716,kidney outer medulla collecting duct principal cell,1,0,0 | ||
| Kidney,Renal Corpuscle,UBERON:0001229,CL:1000742,glomerular mesangial cell,0,0,0 | ||
| Kidney,Renal Corpuscle,UBERON:0001229,CL:0000653,glomerular visceral epithelial cell,1,1,0 | ||
| Kidney,Renal Corpuscle,UBERON:0001229,CL:0002306,epithelial cell of proximal tubule,1,1,0 | ||
| Kidney,Renal Corpuscle,UBERON:0001229,CL:1001005,glomerular capillary endothelial cell,1,1,0 | ||
| Kidney,Renal Corpuscle,UBERON:0001229,CL:1001099,efferent arteriole endothelial cell,0,0,0 | ||
| Kidney,Renal Corpuscle,UBERON:0001229,CL:1000452,parietal epithelial cell,1,1,0 | ||
| Kidney,Renal Corpuscle,UBERON:0001229,CL:1001096,afferent arteriole endothelial cell,0,0,0 | ||
| Kidney,Renal Corpuscle,UBERON:0001229,CL:1000850,macula densa epithelial cell,1,0,0 | ||
| Large Intestine,Crypt Of Lieberkuhn of Large Intestine,UBERON:0001984,CL:1000321,large intestine crypt goblet cell,0,0,0 | ||
| Large Intestine,Crypt Of Lieberkuhn of Large Intestine,UBERON:0001984,CL:0002071,enterocyte of epithelium of large intestine,0,1,1 | ||
| Large Intestine,Crypt Of Lieberkuhn of Large Intestine,UBERON:0001984,CL:0000165,neuroendocrine cell,1,1,0 | ||
| Large Intestine,Crypt Of Lieberkuhn of Large Intestine,UBERON:0001984,CL:0009016,intestinal crypt stem cell of large intestine,0,0,1 | ||
| Large Intestine,Crypt Of Lieberkuhn of Large Intestine,UBERON:0001984,CL:0019032,intestinal tuft cell,0,1,1 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:0009100,hepatic portal fibroblast,1,0,0 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:0019018,blood vessel smooth muscle cell,0,0,0 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:1000413,endothelial cell of artery,1,1,1 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:0000241,stratified cuboidal epithelial cell,0,0,0 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:0000075,columnar/cuboidal epithelial cell,0,0,0 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:0002543,vein endothelial cell,1,1,1 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:0002196,Hepatic oval stem cell,0,0,0 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:1000398,endothelial cell of hepatic sinusoid,1,0,1 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:0000632,hepatic stellate cell,1,1,0 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:0000091,Kupffer Cell,0,0,0 | ||
| Liver,Liver Lobule,UBERON:0004647,CL:0000182,hepatocyte,1,1,1 | ||
| Lung,Bronchial Submucosal Gland,UBERON 8410043,CL:4033055,airway submucosal gland duct ciliated cell,0,0,0 | ||
| Lung,Bronchial Submucosal Gland,UBERON 8410043,CL:4033024,airway submucosal gland duct basal cell,0,0,0 | ||
| Lung,Bronchial Submucosal Gland,UBERON 8410043,CL:4033022,mucus secreting cell of bronchus submucosal gland,1,1,0 | ||
| Lung,Bronchial Submucosal Gland,UBERON 8410043,CL:4033023,serous secreting cell of bronchus submucosal gland,1,1,0 | ||
| Lung,Bronchial Submucosal Gland,UBERON 8410043,CL:4033003,myoepithelial cell of bronchus submucosal gland,0,0,0 | ||
| Lung,Alveolus of Lung,UBERON:0002299,CL:0002063,type II pneumocyte,1,1,1 | ||
| Lung,Alveolus of Lung,UBERON:0002299,CL:0009089,lung pericyte,1,0,0 | ||
| Lung,Alveolus of Lung,UBERON:0002299,CL:0002062,type I pneumocyte,1,1,1 | ||
| Lung,Alveolus of Lung,UBERON:0002299,CL:4028004,alveolar type 1 fibroblast cell,1,1,0 | ||
| Lung,Alveolus of Lung,UBERON:0002299,CL:4033016,secondary crest myofibroblast,0,0,0 | ||
| Lung,Alveolus of Lung,UBERON:0002299,CL:4028002,alveolar capillary type 1 endothelial cell,0,0,0 | ||
| Pancreas,Acinus,UBERON:0001263,CL:0002064,pancreatic acinar cell,1,1,1 | ||
| Pancreas,Acinus,UBERON:0001263,CL:1000322,pancreatic goblet cell,0,0,0 | ||
| Pancreas,Acinus,UBERON:0001263,CL:1001433,epithelial cell of exocrine pancreas,0,0,0 | ||
| Pancreas,Acinus,UBERON:0001263,CL:0002080,pancreatic centro-acinar cell,0,0,0 | ||
| Pancreas,Islet of Langerhans,UBERON:0000006,CL:0000171,pancreatic A cell,1,1,1 | ||
| Pancreas,Islet of Langerhans,UBERON:0000006,CL:0000169,type B pancreatic cell,0,1,1 | ||
| Pancreas,Islet of Langerhans,UBERON:0000006,CL:0000173,pancreatic D cell,1,1,0 | ||
| Pancreas,Islet of Langerhans,UBERON:0000006,CL:0002275,pancreatic PP cell,1,1,1 | ||
| Pancreas,Islet of Langerhans,UBERON:0000006,CL:0002144,capillary endothelial cell,1,1,1 | ||
| Pancreas,Islet of Langerhans,UBERON:0000006,CL:0000235,macrophage,1,1,1 | ||
| Prostate,Prostate Glandular Acinus,UBERON:0004179,CL:1000301,fibroblast of subepithelial connective tissue of prostatic gland,0,0,0 | ||
| Prostate,Prostate Glandular Acinus,UBERON:0004179,CL:1000487,smooth muscle cell of prostate,0,0,0 | ||
| Prostate,Prostate Glandular Acinus,UBERON:0004179,CL:1000299,fibroblast of connective tissue of prostate,0,0,0 | ||
| Prostate,Prostate Glandular Acinus,UBERON:0004179,CL:0002340,luminal cell of prostate epithelium,0,0,1 | ||
| Prostate,Prostate Glandular Acinus,UBERON:0004179,CL:0002341,basal cell of prostate epithelium,0,0,1 | ||
| Prostate,Prostate Glandular Acinus,UBERON:0004179,CL:0000359,vascular associated smooth muscle cell,0,1,1 | ||
| Prostate,Prostate Glandular Acinus,UBERON:0004179,CL:0000669,pericyte,1,1,1 | ||
| Skin,Dermal Papilla,UBERON:0001992,CL:0002620,skin fibroblast,0,0,0 | ||
| Skin,Dermal Papilla,UBERON:0001992,CL:0000115,endothelial cell,1,1,1 | ||
| Skin,Epidermal Ridge,UBERON:0013487,CL:0000649,prickle cell,0,0,0 | ||
| Skin,Epidermal Ridge,UBERON:0013487,CL:0002457,epidermal Langerhans cell,0,1,0 | ||
| Skin,Epidermal Ridge,UBERON:0013487,CL:0000646,basal cell,1,1,1 | ||
| Skin,Epidermal Ridge,UBERON:0013487,CL:0000242,Merkel cell,0,0,0 | ||
| Skin,Epidermal Ridge,UBERON:0013487,CL:1000458,melanocyte of skin,0,1,0 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0000623,natural killer cell,1,1,0 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0000057,fibroblast,1,1,1 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0009080,tuft cell of small intestine,0,0,1 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0000584,enterocyte,0,1,0 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0000097,mast cell,1,1,1 | ||
| Small Intestine,Villus,UBERON 0001213,CL:1000324,duodenal goblet cell,0,0,0 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0000186,myofibroblast,1,1,1 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0000786,plasma cell,1,1,1 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0000451,dendritic cell,1,1,1 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0000236,B cell,1,1,1 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0000771,eosinophil,0,0,0 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0001065,innate lymphoid cell,1,1,1 | ||
| Small Intestine,Villus,UBERON 0001213,CL:0000163,endocrine cell,0,0,0 | ||
| Spleen,Red Pulp,UBERON:0001250,CL:0000877,splenic tingible body macrophage,0,0,0 | ||
| Spleen,Red Pulp,UBERON:0001250,CL:0000872,splenic marginal zone macrophage,0,0,0 | ||
| Spleen,Red Pulp,UBERON:0001250,CL:0000874,splenic red pulp macrophage,0,0,0 | ||
| Spleen,Red Pulp,UBERON:0001250,CL:0001056,"dendritic cell, human",1,1,0 | ||
| Spleen,Red Pulp,UBERON:0001250,CL:0000037,hematopoetic stem cell,0,1,1 | ||
| Spleen,White Pulp,UBERON:0001959,CL:0000876,splenic white pulp macrophage,0,0,0 | ||
| Spleen,White Pulp,UBERON:0001959,CL:0000192,smooth muscle cell,1,1,1 | ||
| Spleen,White Pulp,UBERON:0001959,CL:2000053,splenic endothelial cell,0,0,0 | ||
| Spleen,White Pulp,UBERON:0001959,CL:0000499,stromal cell,1,1,1 | ||
| Spleen,White Pulp,UBERON:0001959,CL:1000489,reticular cell of splenic cord,0,0,0 | ||
| Spleen,White Pulp,UBERON:0001959,CL:0001055,"CD14-positive, CD16-low monocyte",0,0,0 | ||
| Spleen,White Pulp,UBERON:0001959,CL:0000442,follicular dendritic cell,1,0,0 | ||
| Spleen,White Pulp,UBERON:0001959,CL:0000980,plasmablast,1,1,0 | ||
| Spleen,White Pulp,UBERON:0001959,CL:0000775,neutrophil,1,1,1 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0000809,"double-positive, alpha-beta thymocyte",0,0,0 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0000942,thymic plasmacytoid dendritic cell,0,0,0 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0000071,blood vessel endothelial cell,1,1,1 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0000883,thymic cortical macrophage,0,0,0 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0009077,subcapsular cortical epithelial cell,0,0,0 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0001070,beige adipocyte,0,0,0 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0000084,T cell,1,1,1 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0009071,medullary thymic epithelial cell type 1,0,0,0 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0000787,memory B cell,1,1,1 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0009070,corticomedullary thymic epithelial cell,0,0,0 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0000738,leukocyte,1,1,1 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0000882,thymic medullary macrophage,0,0,0 | ||
| Thymus,Thymus Lobule,UBERON:0002125,CL:0000788,naive B cell,1,1,1 |
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