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Padding for PR #1788 Markov Check, record lower recall nodes when plotting data #1789

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Jun 25, 2024
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Padding for PR #1788 Markov Check, record lower recall nodes when plotting data #1789

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9 changes: 9 additions & 0 deletions tetrad-lib/src/main/java/edu/cmu/tetrad/search/MarkovCheck.java
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Original file line number Diff line number Diff line change
Expand Up @@ -407,6 +407,12 @@ public List<List<Node>> getAndersonDarlingTestAcceptsRejectsNodesForAllNodesPlot
Double ar = ap_ar_ahp_ahr.get(1);
Double ahp = ap_ar_ahp_ahr.get(2);
Double ahr = ap_ar_ahp_ahr.get(3);
if (ar < lowRecallBound) {
lowAdjRecallNodes.add(x);
}
if (ahr < lowRecallBound) {
lowAHRecallNodes.add(x);
}
if (!localIndependenceFacts.isEmpty()) {
// All local nodes' p-values for node x.
List<List<Double>> shuffledlocalPValues = getLocalPValues(independenceTest, localIndependenceFacts, shuffleThreshold); // shuffleThreshold default to be 0.5
Expand Down Expand Up @@ -570,6 +576,9 @@ public List<List<Node>> getAndersonDarlingTestAcceptsRejectsNodesForAllNodesPlot
List<Double> lgp_lgr = getPrecisionAndRecallOnMarkovBlanketGraphPlotData2(x, estimatedCpdag, trueGraph);
Double lgp = lgp_lgr.get(0);
Double lgr = lgp_lgr.get(1);
if (lgr < lowRecallBound) {
lowLGRecallNodes.add(x);
}
if (!localIndependenceFacts.isEmpty()) {
// All local nodes' p-values for node x.
List<List<Double>> shuffledlocalPValues = getLocalPValues(independenceTest, localIndependenceFacts, shuffleThreshold);
Expand Down