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Update README.md #26

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Update README.md
jdramsey Aug 20, 2024
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Merge branch 'main' into jdramsey-patch-10
jdramsey Aug 21, 2024
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13 changes: 3 additions & 10 deletions pytetrad/R/README.md
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Expand Up @@ -10,13 +10,6 @@ If you have questions or need more (or different) functionality, or are just flu

## NEWS

* The py-tetrad current Tetrad jar used in this project has been updated to the forthcoming Tetrad version 7.6.2.
* The pseudoinverse option was added to relevant tests and scores--see the TetradSearch.py class.
* An example file was added to show how to use the Markov checker

## SOME PLANS

* We are going to try to make Rpy-Tetrad to install.
* The first step (soon) will be to make all paths _relative_ to the project path, which will be the py-tetrad directory.
* It is also possible to automatically install the Java JDK from R locally. As soon as we can get this work on all platforms we will include that.

* Rpy-tetrad paths for the sample files are all made relative to the directory .../py-tetrad/pytetrad. In RStudio, the idea is to load .../py-tetrad/pytetrad as the project and run the scripts from there.
* A setup.py file has been included to download a JDK locally and set up a Python virtual environment locally. THIS HAS ONLY BEEN TESTED ON ONE MAC LAPTOP SO USE AT YOUR OWN RISK. The previous setup should work if you do not run the setup.py script. If you try the setup.py script and things go badly, quit RStudio and restart.
* Sample script #11 runs BOSS using _rJava_, which avoids using Python. THIS IS NOT FULLY TESTED. If this works out well, we may try to revive the r-causal package, but with the updated rJava.