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Test inf-sup with morphological snakes #303

Merged
merged 191 commits into from
Apr 30, 2023
Merged

Test inf-sup with morphological snakes #303

merged 191 commits into from
Apr 30, 2023

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haesleinhuepf
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grahamross123 and others added 30 commits September 6, 2022 10:48
@grahamross123
Added maximum position function
d98d6ad
@pr4deepr
copied cl file for testing
55e5b30
@pr4deepr
test_change
0c42d24
@pr4deepr
using transforms to get neighbours
d7ab885
@pr4deepr
2nd notebook for testing
b98b585
@pr4deepr
using corrected deskew transform
8416ac2
@pr4deepr
remove trans_rotate matrix
a86243e
@pr4deepr
updating test notebook
6c58689
@pr4deepr
finding neighbour using affine transformation
778c02f
@pr4deepr
updated translate_y to include voxel size
32823a9
@pr4deepr
changed how neighbours are determined
42e2d9f
@pr4deepr
testing opm affine transform
3da4f1c
@pr4deepr
compare linear vs bilinear
0371cb0
@pr4deepr
implementing trilinear interpolation
1ea1f9e
@pr4deepr
bilinear, trilinear and opm kernels for testing
9c0a749
@pr4deepr
orth interpolation using opm code in opencl
a64a951
@pr4deepr
update comments
d8ba674
@pr4deepr
linear interpolation in yz plane
42b58a0
@pr4deepr
del notebook
5caabd2
@pr4deepr
update commments
73fdd8d
@pr4deepr
use relative path for data
7a17faf
@pr4deepr
added trilinear interpolation option
eaa46ce
@grahamross123
Added maximum position test
26fae4e
@grahamross123
Added remaining tests
7cf9da4
@pr4deepr
deskew_y and x with orthogonal interpolation
4902ed5
@pr4deepr
run notebooks again
1c89da6
@haesleinhuepf
type mismatch error in cupy backend
914b8ab
@haesleinhuepf
added missing constants and functions for cupy backend
837b3ea
@haesleinhuepf
corrected FLT_MAX + better compiler error reporting
78059b7
@pr4deepr
renamed kernels and ran notebooks
67658dc
haesleinhuepf and others added 27 commits March 24, 2023 19:21
@haesleinhuepf
Merge pull request #291 from clEsperanto/enumerate_1D_issue
c1403ef 
fix issue with enumerate and zip
@haesleinhuepf
added mode_box filter
e997ea4
@haesleinhuepf
ignore pixels outside image
bdcef65
@haesleinhuepf
added mode_sphere
5dfeab3
@haesleinhuepf
docstrings
f2782e4
@haesleinhuepf
create result images of type uint8
84b17fd
@haesleinhuepf
example notebook
7fcbb2d
@haesleinhuepf
bump version
81f04dc
@haesleinhuepf
Merge pull request #292 from clEsperanto/mode_filters
d9d8267 
Mode filters
@haesleinhuepf
more explanation in demo notebook
46284ce
@haesleinhuepf
bugfix: force kernel size to be integer
93b0efd
@haesleinhuepf
bump version
c570f37
@haesleinhuepf
Merge pull request #293 from clEsperanto/fix_kernel_size_type_constraint
6657c30 
bugfix: force kernel size to be integer
@grahamross123
working 2D sup_inf
bf1427b
@grahamross123
alternate implementation without nesting
e972ab0
@grahamross123
Added 3d support
8d0fcba
@grahamross123
cleaned up notebook
5384ab0
@grahamross123
Added tests
39518be
@grahamross123
Cleaned up notebook
d2b083e
@grahamross123
Fixed tests
314949d
@haesleinhuepf
use custom read for pixels outside image = zero
031d524
@haesleinhuepf
make sure input image is of type uint8
45fbb3b
@haesleinhuepf
fix brackets in tests
3ac5524
@haesleinhuepf
modify test to have zeros around all ones
feca0c6
@haesleinhuepf
added test directly comparing with skimage
c7854c8
@haesleinhuepf
more tests comparing with skimage
26221bb
@haesleinhuepf
updated demo
8c00111
@haesleinhuepf haesleinhuepf changed the base branch from morphological-snakes to morphological-snakes2 April 30, 2023 08:16
@haesleinhuepf haesleinhuepf merged commit 685becd into morphological-snakes2 Apr 30, 2023
@haesleinhuepf haesleinhuepf deleted the test branch April 30, 2023 08:16
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5 participants
@haesleinhuepf @pr4deepr @ClementCaporal @grahamross123 @ENicolay