Add-morpho-chan-vese

[StRigaud]

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Codecov Report

Attention: Patch coverage is 46.66667% with 48 lines in your changes missing coverage. Please review.

Project coverage is 47.43%. Comparing base (39e8f92) to head (3d6832b).
Report is 10 commits behind head on master.

Files	Patch %	Lines
clic/src/tier3/morphological_chan_vese.cpp	43.24%	4 Missing and 38 partials ⚠️
clic/src/tier1/binary_infsup.cpp	62.50%	0 Missing and 3 partials ⚠️
clic/src/tier1/binary_supinf.cpp	62.50%	0 Missing and 3 partials ⚠️

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Additional details and impacted files

@@            Coverage Diff             @@
##           master     #311      +/-   ##
==========================================
- Coverage   47.46%   47.43%   -0.03%     
==========================================
  Files         232      235       +3     
  Lines        3032     3122      +90     
  Branches     1493     1548      +55     
==========================================
+ Hits         1439     1481      +42     
- Misses        411      415       +4     
- Partials     1182     1226      +44     

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[StRigaud]

The kernel sup_inf and inf_sup only work on uint8 type buffer because we are using a specific read function only working on uint8 datatype.

This can be limiting over time and a better implementation of the kernels should be done. This may requires to update the preamble.

[StRigaud]

Test of the morphological chan vese fail because of the smoothing step that is not exactly the same as for scikit image. Something is off and can't find it yet.