Python 2 and 3 compatibility and dependencies update

[aschmu]

As mentioned in #24 it would be good to freshen up some dependencies and make it usable for Python 2.7.x and Python > 3.5.

Please let me know what you think.

[drolli]

Yes, do it please. Nice to see someone helps developing windML. Thanks! Oliver Kramer

…

On 10. Oct 2017, at 22:02, Achille Murangira ***@***.***> wrote: As mentioned in #24 <#24> it would be good to freshen up some dependencies and make it usable for Python 2.7.x and Python > 3.5. Please let me know what you think. You can view, comment on, or merge this pull request online at: #25 <#25> Commit Summary tentative fix for python3 install 2nd attempt use more recent package versions scikit learn install fails: try reordering required packages Revert "scikit learn install fails: try reordering required packages" update README with installation instructions WIP: python 3 compatbility __future__ top of file urllib and friends add todo and stringio fix for python3 nonetype for nrel data 2nd attempt nrel faulure more python 3 compatibility [some py2 breaking changes potentially] WIP: python 3 compatibility + remove playdoh dependency (see #1) module import error fix module import error (more) lambda func typo cast numpy shape to int tuple clean bugfix: cast np shapes, index slices to proper ints/int slices invalid linetype spec more fixes for python 3 compatibility rm build dir add build to ignore list add conda env config file and update requirements remove py3 specification in conda yaml and in package names add travis CI file (just conda) update travis travis malformation travis malformation(2) travis build fails if miniconda isn't specified as latest incompatible package spec (travis) fix travis matplotlib incompatible packages again missing url in setup.py + fixing other python2/3 compat issues (http/file io) remove windml from requirements relative path in tests(travis) 2nd attempt paths in unit tests (travis) add future to requirements for PY2, fix reading from closed file bug and use six to handle urllib for 2and3 fix integer division python 2/3 string io compat (tentative fix) bugfix datapreprocessing array indexing : float to integer conversion cast to numpy before sklearn predict (fix very old api usage) more fixes related to indexing errors (float to int cast) forgotten numpy import six: fix discrepancy in how py2 returns http headers , add yet another forgotten numpy import dimension mismatch (mreg interpolation) + range py2 error fix knn test where nb of neighbors might be > nb samples (git add .), ignore eggs, fix utility function missing args update readme with travis status url fix in init file add manifest fix deprecated sklearn imports (grid search) and update README install instructions Merge branch 'setup-py3' of https://github.com/aschmu/windml into setup-py3 remove basemap from requiremnts (not found on pypi) add readme in setup.py and remove ez_setup add numpy in requires and scipy as first installed dependency remove deprecated crossvalidation imports from sklearn (use model selection module instead) remove deprecated U opening mode in py3 and use rU in py2' removed useless imports and cleanup linting [WIP] Merge branch 'setup-py3' of https://github.com/aschmu/windml into setup-py3 fix deprecated sklearn usage and python2/3 compatible syntax in examples_alt dir, also a few linting here and there fix check availability function to be specific to a certain turbine id fix deprecated sklearn syntax as well as more py2/py3 compatiblity fixes modified changelog updated dependencies in doc (to be continued) remove use2to3 minor modifs (linting, syntax...) fix install from master through pip File Changes M .gitignore <https://github.com/cigroup-ol/windml/pull/25/files#diff-0> (6) A .travis.yml <https://github.com/cigroup-ol/windml/pull/25/files#diff-1> (35) M CHANGELOG.rst <https://github.com/cigroup-ol/windml/pull/25/files#diff-2> (8) A MANIFEST.in <https://github.com/cigroup-ol/windml/pull/25/files#diff-3> (1) M README.md <https://github.com/cigroup-ol/windml/pull/25/files#diff-4> (17) A TODO.md <https://github.com/cigroup-ol/windml/pull/25/files#diff-5> (16) M doc/dependencies.rst <https://github.com/cigroup-ol/windml/pull/25/files#diff-6> (64) M doc/sphinxext/example_builder.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-7> (26) M doc/sphinxext/gen_gallery.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-8> (11) M doc/sphinxext/numpy_ext/docscrape.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-9> (2) M doc/sphinxext/numpy_ext/docscrape_sphinx.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-10> (2) M doc/sphinxext/numpy_ext_old/docscrape.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-11> (2) M doc/sphinxext/numpy_ext_old/docscrape_sphinx.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-12> (2) A environment.yml <https://github.com/cigroup-ol/windml/pull/25/files#diff-13> (44) M examples/missingdata/mar_damaged.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-14> (4) M examples/missingdata/mreg_svr_interpolation.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-15> (76) M examples/missingdata/reconstruction_prediction.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-16> (9) M examples/prediction/forecast_horizon.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-17> (51) M examples/prediction/knn_regression_turbine.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-18> (25) M examples/prediction/svr_regression_turbine.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-19> (33) M examples/unsupervised/manifold.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-20> (13) M examples/unsupervised/sequence.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-21> (36) M examples/visualization/park_info.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-22> (10) M examples_alt/missingdata/mreg_svr_interpolation.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-23> (4) M examples_alt/missingdata/reconstruction.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-24> (10) M examples_alt/missingdata/reconstruction_prediction.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-25> (9) M examples_alt/prediction/compare_regressors_param.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-26> (4) M examples_alt/prediction/horizon_mse.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-27> (6) M examples_alt/prediction/knn_regression_turbine.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-28> (31) M examples_alt/prediction/lin_regression_turbine.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-29> (34) M examples_alt/prediction/svr_regression_turbine.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-30> (43) M examples_alt/prediction/svr_response_curve.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-31> (9) M examples_alt/statistics/park_info.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-32> (36) M examples_alt/statistics/ramps.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-33> (20) M examples_alt/statistics/turbine_info.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-34> (41) M examples_alt/statistics/windspeed_histogram.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-35> (2) M examples_alt/visualization/aemo_topography.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-36> (7) M examples_alt/visualization/clustering.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-37> (3) M examples_alt/visualization/sequence.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-38> (39) M examples_alt/visualization/show_coord_topo.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-39> (11) M examples_alt/visualization/wind_embeddings.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-40> (81) M requirements.txt <https://github.com/cigroup-ol/windml/pull/25/files#diff-41> (19) M setup.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-42> (88) M tests/preprocessing_test.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-43> (6) M tests/visualization_test.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-44> (4) M windml/__init__.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-45> (2) M windml/datasets/aemo.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-46> (191) M windml/datasets/nrel.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-47> (175) M windml/mapping/power_diff_mapping.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-48> (43) M windml/model/turbine.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-49> (15) M windml/model/windpark.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-50> (7) M windml/optimization/grid_search.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-51> (30) M windml/optimization/one_plus_one_ea.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-52> (24) M windml/preprocessing/backward_copy.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-53> (11) M windml/preprocessing/duplicate_remover.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-54> (5) M windml/preprocessing/forward_copy.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-55> (8) M windml/preprocessing/linear_interpolation.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-56> (9) M windml/preprocessing/mar_destroyer.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-57> (18) M windml/preprocessing/marthres_destroyer.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-58> (4) M windml/preprocessing/missing_data_finder.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-59> (3) M windml/preprocessing/mreg_interpolation.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-60> (146) M windml/preprocessing/nmar_destroyer.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-61> (8) M windml/preprocessing/nrel_repair.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-62> (11) M windml/preprocessing/override_missing.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-63> (10) M windml/preprocessing/topologic_interpolation.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-64> (19) M windml/util/features.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-65> (53) M windml/util/power_features.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-66> (15) M windml/visualization/plot_multiple_timeseries.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-67> (22) M windml/visualization/show_coord_topo.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-68> (10) M windml/visualization/show_coord_topo_turbine.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-69> (10) M windml/visualization/show_coord_topo_zoom.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-70> (19) M windml/visualization/show_flip_book.py <https://github.com/cigroup-ol/windml/pull/25/files#diff-71> (52) Patch Links: https://github.com/cigroup-ol/windml/pull/25.patch <https://github.com/cigroup-ol/windml/pull/25.patch> https://github.com/cigroup-ol/windml/pull/25.diff <https://github.com/cigroup-ol/windml/pull/25.diff> — You are receiving this because you are subscribed to this thread. 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