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Bump the production-dependencies group across 1 directory with 6 updates #28

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@dependabot dependabot bot commented on behalf of github Sep 1, 2024

Bumps the production-dependencies group with 6 updates in the / directory:

Package From To
pybids 0.16.5 0.17.0
mne 1.7.1 1.8.0
numpy 1.26.4 2.1.0
scipy 1.14.0 1.14.1
matplotlib 3.9.1 3.9.2
neurokit2 0.2.9 0.2.10

Updates pybids from 0.16.5 to 0.17.0

Release notes

Sourced from pybids's releases.

0.17.0

DOI

Release notes

Feature release in the 0.17.0 series.

This release includes experimental support for MRS (BEP22) datasets and universal_pathlib.

Changes

  • ENH: pathlib -> universal_pathlib to enable cloud (and other filesystem) support (#1074)
  • ENH: Add MRS entities, path patterns (#1075)
  • STY: No parentheses after assert (#1065)
  • MNT: Bump bids-examples from 47c4da1 to 401f4cf (#1073)
  • MNT: Fix typo newly found by codespell (#1066)

Full Changelog: bids-standard/pybids@0.16.5...0.17.0

Changelog

Sourced from pybids's changelog.

Version 0.17.0 (July 29, 2024)

Feature release in the 0.17.0 series.

This release includes experimental support for MRS (BEP22) datasets and universal_pathlib <https://github.com/fsspec/universal_pathlib>__.

  • ENH: pathlib -> universal_pathlib to enable cloud (and other filesystem) support (#1074)
  • ENH: Add MRS entities, path patterns (#1075)
  • STY: No parentheses after assert (#1065)
  • MNT: Bump bids-examples from 47c4da1 to 401f4cf (#1073)
  • MNT: Fix typo newly found by codespell (#1066)
Commits
  • 062ce4c DOC: 0.17.0 changelog
  • c6b433f Update Zenodo
  • 47ddf00 Merge pull request #1074 from akhanf/upath
  • 80b9391 Apply suggestions from code review
  • 6c2ea5e Merge pull request #1075 from effigies/bep022
  • a8d46f9 Merge pull request #1073 from bids-standard/dependabot/submodules/bids-exampl...
  • 877846b TEST: Expect more files
  • a490c76 ENH: Add MRS entities, path patterns
  • 022024d fsspec and upath for cloud/remote paths
  • 2468632 Build(deps): Bump bids-examples from 47c4da1 to 401f4cf
  • Additional commits viewable in compare view

Updates mne from 1.7.1 to 1.8.0

Release notes

Sourced from mne's releases.

v1.8.0

Full Changelog: mne-tools/mne-python@v1.7.0...v1.8.0

Commits

Updates numpy from 1.26.4 to 2.1.0

Release notes

Sourced from numpy's releases.

2.1.0 (Aug 18, 2024)

NumPy 2.1.0 Release Notes

NumPy 2.1.0 provides support for the upcoming Python 3.13 release and drops support for Python 3.9. In addition to the usual bug fixes and updated Python support, it helps get us back into our usual release cycle after the extended development of 2.0. The highlights for this release are:

  • Support for the array-api 2023.12 standard.
  • Support for Python 3.13.
  • Preliminary support for free threaded Python 3.13.

Python versions 3.10-3.13 are supported in this release.

New functions

New function numpy.unstack

A new function np.unstack(array, axis=...) was added, which splits an array into a tuple of arrays along an axis. It serves as the inverse of [numpy.stack]{.title-ref}.

(gh-26579)

Deprecations

  • The fix_imports keyword argument in numpy.save is deprecated. Since NumPy 1.17, numpy.save uses a pickle protocol that no longer supports Python 2, and ignored fix_imports keyword. This keyword is kept only for backward compatibility. It is now deprecated.

    (gh-26452)

  • Passing non-integer inputs as the first argument of [bincount]{.title-ref} is now deprecated, because such inputs are silently cast to integers with no warning about loss of precision.

    (gh-27076)

Expired deprecations

  • Scalars and 0D arrays are disallowed for numpy.nonzero and numpy.ndarray.nonzero.

    (gh-26268)

  • set_string_function internal function was removed and PyArray_SetStringFunction was stubbed out.

... (truncated)

Commits
  • 2f7fe64 Merge pull request #27236 from charris/prepare-2.1.0
  • b6f434f REL: Prepare for the NumPy 2.1.0 release [wheel build]
  • 3cf9394 Merge pull request #27234 from charris/backport-25984
  • 7443dcc Merge pull request #27233 from charris/backport-27223
  • 85b1cab BUG: Allow fitting of degree zero polynomials with Polynomial.fit
  • 395a81d DOC: reword discussion about shared arrays to hopefully be clearer
  • 5af2e96 Move NUMUSERTYPES thread safety discussion to legacy DType API docs
  • d902c24 DOC: add docs on thread safety in NumPy
  • c080180 Merge pull request #27229 from charris/backport-27226
  • 44ce7e8 BUG: Fix PyArray_ZeroContiguousBuffer (resize) with struct dtypes
  • Additional commits viewable in compare view

Updates scipy from 1.14.0 to 1.14.1

Release notes

Sourced from scipy's releases.

SciPy 1.14.1 Release Notes

SciPy 1.14.1 adds support for Python 3.13, including binary wheels on PyPI. Apart from that, it is a bug-fix release with no new features compared to 1.14.0.

Authors

  • Name (commits)
  • h-vetinari (1)
  • Evgeni Burovski (1)
  • CJ Carey (2)
  • Lucas Colley (3)
  • Ralf Gommers (3)
  • Melissa Weber Mendonça (1)
  • Andrew Nelson (3)
  • Nick ODell (1)
  • Tyler Reddy (36)
  • Daniel Schmitz (1)
  • Dan Schult (4)
  • Albert Steppi (2)
  • Ewout ter Hoeven (1)
  • Tibor Völcker (2) +
  • Adam Turner (1) +
  • Warren Weckesser (2)
  • ਗਗਨਦੀਪ ਸਿੰਘ (Gagandeep Singh) (1)

A total of 17 people contributed to this release. People with a "+" by their names contributed a patch for the first time. This list of names is automatically generated, and may not be fully complete.

Commits
  • 92d2a85 REL: 1.14.1 rel commit [wheel build]
  • 85623a1 Merge pull request #21362 from tylerjereddy/treddy_1.14.1_backports
  • d924005 MAINT: PR 21362 revisions [wheel build]
  • b901a4e MAINT, CI: PR 21362 revisions [wheel build]
  • 2a7ec60 MAINT, BLD: PR 21362 revisions [wheel build]
  • f4f084d MAINT, CI: PR 21362 revisions [wheel build]
  • b712fc6 DOC: update 1.14.1 relnotes [wheel build]
  • cdd5aca MAINT: special: Accommodate changed integer handling in NumPy 2.0. (#21401)
  • 0f91838 BLD: cp313 wheels on manylinux_aarch64 (#21409)
  • 6dd0b00 MAINT, CI: wheel build changes [wheel build]
  • Additional commits viewable in compare view

Updates matplotlib from 3.9.1 to 3.9.2

Release notes

Sourced from matplotlib's releases.

REL: 3.9.2

This is the second bugfix release of the 3.9.x series.

This release contains several bug-fixes and adjustments:

  • Be more resilient to I/O failures when writing font cache
  • Fix nondeterministic behavior with subplot spacing and constrained layout
  • Fix sticky edge tolerance relative to data range
  • Improve formatting of image values in cases of singular norms

Windows wheels now bundle the MSVC runtime DLL statically to avoid inconsistencies with other wheels and random crashes depending on import order.

Commits
  • a254b68 REL: 3.9.2
  • 056f307 DOC: Create release notes for 3.9.2
  • 8d867ce Merge branch 'v3.9.1-doc' into v3.9.x
  • 7be8675 Merge pull request #28687 from QuLogic/static-msvc
  • 3ed3d7b Merge pull request #28695 from meeseeksmachine/auto-backport-of-pr-27797-on-v...
  • 8a62afa BLD: Include MSVCP140 runtime statically
  • 81be26f Merge pull request #28688 from QuLogic/auto-backport-of-pr-28668-on-v3.9.x
  • d88a582 Backport PR #27797: DOC: Use video files for saving animations
  • e3159ba Merge pull request #28692 from meeseeksmachine/auto-backport-of-pr-28632-on-v...
  • 465401e Backport PR #28632: DOC: Tell sphinx-gallery to link mpl_toolkits from our build
  • Additional commits viewable in compare view

Updates neurokit2 from 0.2.9 to 0.2.10

Release notes

Sourced from neurokit2's releases.

0.2.10

🚀 What’s New

See the NEWS file for the changelog.

👏 Thanks to

@​DerAndereJohannes, @​DominiqueMakowski, @​MarcBalle, @​S-N-2019, @​ajb5d, @​atpage, @​danibene, @​peterhcharlton, @​visserle and Marc Balle

Commits
  • 45c9ad9 Merge pull request #992 from neuropsychology/dev
  • d783e40 Merge pull request #1021 from visserle/patch-1
  • 124dc04 >np.Inf was removed in the NumPy 2.0 release. Use np.inf instead.
  • b99036c Merge pull request #1017 from DerAndereJohannes/feature-codebook-docs
  • 86f42cf Merge pull request #1020 from peterhcharlton/patch-1
  • 581fbda Update ecg_peaks.py
  • ee87db7 Merge pull request #1018 from peterhcharlton/add_msptdfastv1.1
  • 5d3e044 Add MSPTDfast algorithm
  • 8195d2f Merge pull request #1016 from danibene/fix/gudb_name_consistency
  • b37098f added newline separators to all codebookadd directives
  • Additional commits viewable in compare view

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Bumps the production-dependencies group with 6 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [pybids](https://github.com/bids-standard/pybids) | `0.16.5` | `0.17.0` |
| [mne](https://github.com/mne-tools/mne-python) | `1.7.1` | `1.8.0` |
| [numpy](https://github.com/numpy/numpy) | `1.26.4` | `2.1.0` |
| [scipy](https://github.com/scipy/scipy) | `1.14.0` | `1.14.1` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.9.1` | `3.9.2` |
| [neurokit2](https://github.com/neuropsychology/NeuroKit) | `0.2.9` | `0.2.10` |



Updates `pybids` from 0.16.5 to 0.17.0
- [Release notes](https://github.com/bids-standard/pybids/releases)
- [Changelog](https://github.com/bids-standard/pybids/blob/master/CHANGELOG.rst)
- [Commits](bids-standard/pybids@0.16.5...0.17.0)

Updates `mne` from 1.7.1 to 1.8.0
- [Release notes](https://github.com/mne-tools/mne-python/releases)
- [Commits](mne-tools/mne-python@v1.7.1...v1.8.0)

Updates `numpy` from 1.26.4 to 2.1.0
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v1.26.4...v2.1.0)

Updates `scipy` from 1.14.0 to 1.14.1
- [Release notes](https://github.com/scipy/scipy/releases)
- [Commits](scipy/scipy@v1.14.0...v1.14.1)

Updates `matplotlib` from 3.9.1 to 3.9.2
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.9.1...v3.9.2)

Updates `neurokit2` from 0.2.9 to 0.2.10
- [Release notes](https://github.com/neuropsychology/NeuroKit/releases)
- [Changelog](https://github.com/neuropsychology/NeuroKit/blob/master/NEWS.rst)
- [Commits](neuropsychology/NeuroKit@v0.2.9...v0.2.10)

---
updated-dependencies:
- dependency-name: pybids
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: production-dependencies
- dependency-name: mne
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: production-dependencies
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: production-dependencies
- dependency-name: scipy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: production-dependencies
- dependency-name: matplotlib
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: production-dependencies
- dependency-name: neurokit2
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: production-dependencies
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Sep 1, 2024
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dependabot bot commented on behalf of github Oct 1, 2024

Superseded by #30.

@dependabot dependabot bot closed this Oct 1, 2024
@dependabot dependabot bot deleted the dependabot/pip/production-dependencies-1e9eeb603d branch October 1, 2024 22:11
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