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feat: add cellxgene schema 3.0.0 fields to Standard Categories #412

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merged 1 commit into from
Aug 23, 2022
Merged

feat: add cellxgene schema 3.0.0 fields to Standard Categories #412

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4 changes: 4 additions & 0 deletions client/src/common/types/entities.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -15,13 +15,17 @@ export const STANDARD_CATEGORY_NAMES = [
"disease_ontology_term_id",
"ethnicity",
"ethnicity_ontology_term_id",
"self_reported_ethnicity",
"self_reported_ethnicity_ontology_term_id",
"is_primary_data",
"organism",
"organism_ontology_term_id",
"sex_ontology_term_id",
"sex",
"tissue_ontology_term_id",
"tissue",
"suspension_type",
"donor_id",
];

/**
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2 changes: 1 addition & 1 deletion server/tests/fixtures/test_bad_config.yaml
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Expand Up @@ -14,7 +14,7 @@ obs:
tissue_ontology_term_id: UBERON:12345
assay_ontology_term_id: EFO:12345
disease_ontology_term_id: MONDO:12345
ethnicity_ontology_term_id: MANCESTRO:12345
self_reported_ethnicity_ontology_term_id: MANCESTRO:12345
development_stage_ontology_term_id: HsapDv:12345
sex: other
uns:
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2 changes: 1 addition & 1 deletion server/tests/fixtures/test_config.yaml
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Expand Up @@ -14,7 +14,7 @@ obs:
tissue_ontology_term_id: UBERON:12345
assay_ontology_term_id: EFO:12345
disease_ontology_term_id: MONDO:12345
ethnicity_ontology_term_id: HANCESTRO:12345
self_reported_ethnicity_ontology_term_id: HANCESTRO:12345
development_stage_ontology_term_id: HsapDv:12345
sex: other
uns:
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