feat: add cellxgene schema 3.0.0 fields to Standard Categories (#412)

chanzuckerberg · Aug 23, 2022 · b265fcf · b265fcf
1 parent 90f976e
commit b265fcf
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Showing 3 changed files with 6 additions and 2 deletions.
diff --git a/client/src/common/types/entities.ts b/client/src/common/types/entities.ts
@@ -15,13 +15,17 @@ export const STANDARD_CATEGORY_NAMES = [
   "disease_ontology_term_id",
   "ethnicity",
   "ethnicity_ontology_term_id",
+  "self_reported_ethnicity",
+  "self_reported_ethnicity_ontology_term_id",
   "is_primary_data",
   "organism",
   "organism_ontology_term_id",
   "sex_ontology_term_id",
   "sex",
   "tissue_ontology_term_id",
   "tissue",
+  "suspension_type",
+  "donor_id",
 ];
 
 /**

diff --git a/server/tests/fixtures/test_bad_config.yaml b/server/tests/fixtures/test_bad_config.yaml
@@ -14,7 +14,7 @@ obs:
     tissue_ontology_term_id: UBERON:12345
     assay_ontology_term_id: EFO:12345
     disease_ontology_term_id: MONDO:12345
-    ethnicity_ontology_term_id: MANCESTRO:12345
+    self_reported_ethnicity_ontology_term_id: MANCESTRO:12345
     development_stage_ontology_term_id: HsapDv:12345
     sex: other
 uns:

diff --git a/server/tests/fixtures/test_config.yaml b/server/tests/fixtures/test_config.yaml
@@ -14,7 +14,7 @@ obs:
     tissue_ontology_term_id: UBERON:12345
     assay_ontology_term_id: EFO:12345
     disease_ontology_term_id: MONDO:12345
-    ethnicity_ontology_term_id: HANCESTRO:12345
+    self_reported_ethnicity_ontology_term_id: HANCESTRO:12345
     development_stage_ontology_term_id: HsapDv:12345
     sex: other
 uns: