fix to break and sort

chanzuckerberg · Dec 6, 2023 · d81b455 · d81b455
1 parent f9e7183
commit d81b455
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/workflows/index-generation/index-generation.wdl b/workflows/index-generation/index-generation.wdl
@@ -674,8 +674,7 @@ task SplitFastaBySeqLengthAndSort {
         set -euxo pipefail
 
         total_seqs=$(grep ">" ~{fasta} | wc -l)
-        ncbi-compress  \
-            --break-up-fasta-by-sequence-length  \
+        ncbi-compress  break-up-fasta-by-sequence-length  \
             --input-fasta ~{fasta}  \
             --temp-file-output-dir outputs  \
             --total-sequence-count ${total_seqs}  \