CGAT-core is a workflow management system that allows users to quickly and reproducibly build scalable data analysis pipelines. CGAT-core is a set of libraries and helper functions used to enable researchers to design and build computational workflows for the analysis of large-scale data-analysis.
Documentation for CGAT-core can be accessed here
CGAT-core is open-sourced, powerful and user-friendly, and has been continually developed as a Next Generation Sequencing (NGS) workflow management system over the past 10 years.
The following sections describe how to install the cgatcore framework.
The preferred method to install the cgatcore is using conda, by following the instructions on read the docs. However, there are a few other methods to install cgatcore, including pip and our own bash script installer.
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