update from BioKIC 20230814 #6
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
- Resolve issue with occurrence-taxon indexing code - Only build sciname from taxon units if all units are mapped - Resolve issue with ID Key editor not displaying characters that are not grouped -Taxon Profile insert issue
Hotfix: Occurrence upload, Key editor, Taxon Profile
* Occurrence Upload adjustment
- Trim off delimiters that are left on the beginning or end of filter string to ensure that null values are not included
* Collection Listing bug fix
- Collection categories failing to be persist
* Occurrence Image Submissions issue resolution
- Set default image sort order to 40 for observations to ensure that preserved specimen images do not take precedence
* Image Processing bug
- collection identifier (collid) failed to be passed to statistics update function
* Resolve Taxonomy Harvester issues
- Improve TROPICOS method of matching on infraspecific taxa
- Improve close match suggestions
* Taxonomy Harvesting minor adjustments - Check resources before interpretation and again after interpretation - If name is matched within one recourse, skip the unnecessary step to check other resources - Synchronize display text * Refactor ImageLocalProcessor and resolve various bugs - Provide support for input file to include medium and thumbnail image derivatives - Expand Image Map processing to allow mapping file to include any images table field name - Expand images insert function to handle any valid field found within images table - Merge duplicate actions into shared private functions - MD5 hash large version of image input file, but don't overwrite hash if supplied by source, unless image is not modified by upload scripts - Handle BOM characters at start of csv file. - Trim header elements for testing column names. - Enforce default action of accepting derivative urls supplied within a csv image map file - Improve uriExists function - Make sure to remove staging images * Occurrence Public Display page - Allow occurrence archive (deleted occurrences) to be searchable by GUID (occurrenceID, recordID), thus reporting when a record is deleted * Checklist multi-polygon map Issue - Multipolygons defined within a checklist fail to map within both simple and dynamic maps * Suppress geo ref index during stats update * Occurrence Reviewer bug - Fix for field name and start and end date filter variables failing to be carried forward when advancing to pages beyond 1000 records BioKIC#335 * Collection metadata editor bug - Reset contact array to ensure that JSON string is standardized as a non-associated array Resolves issue: BioKIC#487 --------- Co-authored-by: Greg Post <[email protected]>
* Hotfix - 2023-07-22 - DwcArchivePublishing: Material Sample publishing bug - DwC-A upload: Scientific name failed to be built when taxonomic data is supplied by by individual components - Taxonomic autocomplete: Allow autocomplete handle apostrophes - Checklist Display: Bug fix that interfered with display of linked voucher images - Checklist Manager: Checklist taxon search autocomplete failed to include higher taxa (parent data) - Taxonomy Harvester bug: F-dex harvest failed to grab parents when source was not "Index Fungorum" - Specimen Upload: Set version data changes as the default action only when a collection is live managed - Occurrence Search Harvest: Reworked search form validation to be more efficient; Fix bug with occurrence attribute checkbox/radio failing to be recognized as a selected component * Hotfix 2023-06-19 (BioKIC#518) - Taxonomy Harvesting: Don't check following taxonomic resource on a positive match and input; synchronize display text - Refactor ImageLocalProcessor: -- Provide support for input file to include medium and thumbnail image derivatives -- Expand Image Map processing to allow mapping file to include any images table field name -- Expand images insert function to handle any valid field found within images table -- MD5 hash large version of image input file, but don't overwrite hash if supplied by source -- Handle BOM characters at start of csv file. -- Trim header elements for testing column names. -- Enforce default action of accepting derivative urls supplied within a csv image map file -- Make sure to remove staging images - Occurrence Public Display: Allow occurrence archive (deleted occurrences) to be searchable by GUID (occurrenceID, recordID), thus reporting when a record is deleted - Checklist multi-polygon Map: resolve Multipolygons failing to map within both simple and dynamic maps - Occurrence Reviewer: Fix for field name and start and end date filter variables failing to be carried forward when advancing to pages beyond 1000 records - Collection metadata editor: Reset contact array to ensure that JSON string is standardized as a non-associated array --------- Co-authored-by: Greg Post <[email protected]>
hotfix 2023-07-31 * Glossary issues - Allow terms search to do a double wildcard search to expand functionality and resolve issue with zero return when html tags (e.g. italic) are included with the terms - Remove restrictions and unnecessary default actions associated with unset language and taxon terms so that thesaurus better functions as a single language glossaries - Fix various issues with export of report when there is a single language glossary and/or terms are not linked to specific taxa - Fix issue report export not including full list when terms have complex language relationships - Improve file naming and content/layout of Word report export - Resolve issues with inclusion of all Spanish language translation files - Include translations for some missed terms * Occurrence editor - Fix bug with year, month, day field failing to null when eventDate is nulled out - allow tidInterpreted value to be transferred when scientific name is added to form via duplicate tool * Occurrence Search - Fix issue with autocomplete failing to return names that contain single or double quotes - Fix issue taxon name search failing to return correct data when name contains single or double quotes - Map Search: resolved issue where map recenters in the middle of the ocean when a search returns no coordinates * Taxonomy issues and bugs - Taxonomy Utilities: Fix issue interfering import of taxa with hybrid symbol when there is not a space between symbol and name units - Taxonomy Harvesting: Resolve 'Unranked" taxonRank designations when taxon is a non-accepted genus - Taxonomy Upload: Minor adjustments needed to support processing of taxa immediately adjacent to kingdom rank
* Occurrence Search bug - Resolve issue with sanitation of occurrence search variables held within session storage
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Pull Request Checklist:
Developmentbranch, NOTmasterDevelopmentandmasterbranches (at the same time).Developmentbranch, remember to use the squash & merge optionDevelopmentbranch into the master branch, remember to use the merge optionDevelopmentbranch to prevent accidental merges while QA takes placeThanks for contributing and keeping it clean!