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v3.9.0
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@rsgoncalves rsgoncalves released this 05 Jan 00:04
· 28 commits to master since this release
v3.9.0
e578bcd

Change Log

User-facing changes:

  • Add a column to the nhanes_variables.tsv table called IsPhenotype that specifies if a variable is a phenotype or not (closes #15).
  • Add oral health variable mappings and synonyms contributed by the Harvard School of Dental Medicine (closes #1).
    • Add table metadata/synonym_table.tsv of 'variable label synonyms' containing alternate descriptions of variables in oral health tables.
    • Add table ontology-mappings/nhanes_oral_health_mappings.tsv of human-verified mappings for variables in oral health tables.

Internal changes:

  • Add non-phenotype templates in phonto vignettes to our (non-phenotype) blocklist (#15).
  • Add new patterns of non-phenotypes found in low-scored mappings (#16).
  • Add variables with only EnglishInstructions (e.g., "check item" variables or instructions-only variables) to the non-phenotype "blocklist" (closes #23).
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