Code

Add initial extension#1

Code

Merged

CodyCBakerPhD merged 46 commits intomaincatalystneuro/ndx-extracellular-channels:mainfrom initial-extensioncatalystneuro/ndx-extracellular-channels:initial-extensionCopy head branch name to clipboardJul 23, 2024

+4,216-45

Commits

Commits on Apr 19, 2024

• Add initial extension without tests or custom api

  rly

  committed
  13ebfce

• Merge branch 'main' into initial-extension

  CodyCBakerPhD

  authored
  8b1c0a8

• Update README.md

  CodyCBakerPhD

  authored
  eb86335

Commits on Apr 21, 2024

• Add tests, small updates to spec

  rly

  committed
  d08b2cb

• Add "in_mm", add example usage, update tests

  rly

  committed
  2a0d0ff

Commits on Apr 30, 2024

• Add comments

  rly

  committed
  912dcf3

Commits on Jun 1, 2024

• Delete notebooks/example.ipynb

  rly

  authored
  f1069e5

• Remove references to tetrodeseries

  rly

  committed
  3615ce6

• Update spec/ndx-extracellular-channels.extensions.yaml

  rly

  authored
  0dc40d7

• Clarify planar_contour

  rly

  committed
  243ae09

• Minor refactor, support probeinterface IO

  rly

  committed
  58e51c6

• Fix lint

  rly

  committed
  e543220

• Add probeinterface to dev env

  rly

  committed
  952f574

• Fix probeinterface import

  rly

  committed
  8366145

Commits on Jun 4, 2024

• Add back ProbeModel.model, remove 1D contour case

  rly

  committed
  bf90877

• Update ruff config to latest recommended usage

  rly

  committed
  b75e0dd

Commits on Jun 29, 2024

• Change name of device_channel

  rly

  committed
  a9bc351

• Rename actual_x to confirmed_x

  rly

  committed
  055e9f5

Commits on Jun 30, 2024

• Restructure position fields

  rly

  committed
  1868478

• Rearrange spec, update readme

  rly

  committed
  d0d3ecc

• Update probeinterface test

  rly

  committed
  6df9d51

• Apply black

  rly

  committed
  a2ec469

• Update docstring

  rly

  committed
  89a147d

• Update comments

  rly

  committed
  a87500b

• Update doc

  rly

  committed
  8783ed4

Commits on Jul 2, 2024

• Add asserts to test all

  rly

  committed
  bcf792c

Commits on Jul 11, 2024

• Fix probeinterface converter shape keys

  rly

  committed
  efa76fe

• Remove print

  rly

  committed
  7888afd

• Apply black, ruff, isort

  rly

  committed
  4369cdc

Commits on Jul 12, 2024

• Make contact required, minor other fixes

  rly

  committed
  80dd349

• Improve eseries api for unit, fix value to microvolts

  rly

  committed
  b294ba2

• Make plane_axes realistic

  rly

  committed
  62a3ae5

• Fix

  rly

  committed
  c8da35f

• Fix mermaid typo

  rly

  committed
  e45e439

• Fix mermaid typo

  rly

  committed
  7559c91

Commits on Jul 19, 2024

• Apply suggestions from code review

  rly

  committed
  6b50524

• "reference_mode" -> "electrical_reference_mode"

  rly

  committed
  55eb79a

• Add "ground", rename "electrical_reference_description"

  rly

  committed
  93d3385

• Remove "device_channel" from ContactsTable

  rly

  committed
  ec02359

• Apply black

  rly

  committed
  cbce216

Commits on Jul 20, 2024

• fix name

  h-mayorquin

  committed
  590bc05

Commits on Jul 22, 2024

• Update doc for "reference_contact" and angles

  rly

  committed
  1a73df3

• Move ProbeInsertion from ChannelsTable to Probe

  rly

  committed
  1b0b9bb

• Update mermaid diagram for probe_insertion move

  rly

  committed
  fd700a6

• Fix relative_position_in_mm should be in um

  rly

  committed
  3151258

• Remove ContactsTable.relative_position_in_um.reference

  rly

  committed
  b8b29e2