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Auto-generated via {sandpaper} Source : c6ba6d1 Branch : main Author : Trevor Keller <[email protected]> Time : 2023-08-04 15:02:27 +0000 Message : Merge pull request #10 from carpentries-incubator/snakefiles Draft example snakefiles.
carpentries-incubator · Aug 4, 2023 · 4f99973 · 4f99973
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diff --git a/files/Snakefile_amdahl_cluster b/files/Snakefile_amdahl_cluster
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+rule one:
+  input:
+  output: 'amdahl_cluster.txt'
+  resources:
+    mpi="mpirun",
+    tasks=3
+  shell: 
+    "module load OpenMPI; mpirun -np {resources.tasks} amdahl > amdahl_cluster.txt"
diff --git a/files/Snakefile_cluster b/files/Snakefile_cluster
@@ -0,0 +1,4 @@
+rule:
+  input:
+  output: 'host.txt'
+  shell: 'hostname > host.txt'
diff --git a/files/Snakefile_hello b/files/Snakefile_hello
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+rule:
+  input: 
+  output: 'hello.txt'
+  shell:  'echo "Hello there, world!" >> hello.txt'
diff --git a/files/Snakefile_tworules b/files/Snakefile_tworules
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+rule last:
+  input: 'lower.txt'
+  output: 'upper.txt'
+  shell: 'cat lower.txt | tr a-z A-Z > upper.txt'
+
+rule first:
+  input:
+  output: 'lower.txt'
+  shell: 'echo "Hello, world!" > lower.txt'