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mallewellyn authored Mar 21, 2024
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Expand Up @@ -348,7 +348,7 @@ In addition to visualising cluster identity in scatter plots, it is also possibl
highlight branches in dentrograms. In this example, we calculate a distance matrix between
samples in the `methyl_mat` dataset. We then draw boxes round clusters obtained with `cutree`.
```{r plot-clust-method, fig.cap="Dendogram with boxes around clusters.", fig.alt="A dendogram for the methyl_mat data with boxes overlain on clusters. There are 5 clusters in total, each delineating a separate cluster."}
```{r plot-clust-method, fig.cap="Dendogram with boxes around clusters.", fig.alt="A dendogram for the methyl_mat data with boxes overlaid on clusters. There are 5 boxes in total, each indicating separate clusters."}
## create a distance matrix using euclidean method
distmat <- dist(methyl_mat)
## hierarchical clustering using complete method
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