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setup notes #57

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Oct 8, 2024
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setup notes #57

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14 changes: 3 additions & 11 deletions learners/setup.md
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Expand Up @@ -2,16 +2,14 @@
title: Setup
---

- Install R, RStudio and packages (see below).

### R and RStudio

- R and RStudio are separate downloads and installations. R is a programming language and collection of software that implements that language. RStudio is a graphical integrated development environment
R and RStudio are separate downloads and installations. R is a programming language and collection of software that implements that language. RStudio is a graphical integrated development environment
(IDE) that makes using R easier and more interactive. You need to install R
before you install RStudio. After installing both programs, you will need to
install some R libraries from within RStudio. If you need to install R and/or RStudio, there are platform-specific installation instructions in the [Introduction to Bioconductor module](https://carpentries-incubator.github.io/bioc-intro/).

### For everyone
### Package installation

After installing R and RStudio, you need to install some packages that will be
used during the workshop. We will also learn about package installation during
Expand All @@ -29,11 +27,5 @@ BiocManager::install(c("AUCell", "batchelor", "BiocStyle",
Ncpus = 4)
```

<!---
grep -Ph "library\(" episodes/*.Rmd | sort | uniq

^these are all libraries loaded in the episodes
-->


You can adjust `Ncpus` as needed for your machine.

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