Updated first two lessons and setup instructions. #1
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Setup Package Cache
dependency ‘S4Vectors’ is not available
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Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/[email protected], actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Validate and Build Markdown:
episodes/intro-sce.Rmd#L156
[uninformative link text]: [here](https://carpentries-incubator.github.io/bioc-intro/60-next-steps.html)
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Validate and Build Markdown:
episodes/eda_qc.Rmd#L204
[needs HTTPS]: [Section 1.5 of OSCA advanced](http://bioconductor.org/books/3.17/OSCA.advanced/quality-control-redux.html#qc-discard-cell-types)
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Validate and Build Markdown:
episodes/hca.Rmd#L72
[image missing alt-text]: figures/curatedAtlasQuery.png
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "built", "diff", "pr".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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