Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

added pybids #49

Merged
merged 1 commit into from
Jun 3, 2021
Merged

added pybids #49

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
247 changes: 196 additions & 51 deletions code/2_sMRI_image_cleanup.ipynb
View file
Open in desktop

Large diffs are not rendered by default.

87 changes: 73 additions & 14 deletions code/3_sMRI_spatial_norm.ipynb
View file
Open in desktop

Large diffs are not rendered by default.

4 changes: 2 additions & 2 deletions setup.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ For easy set-up we recommend [Anaconda](https://www.anaconda.com/download/) to m

```
conda install -y numpy pandas scipy scikit-learn matplotlib seaborn jupyter ipykernel nb_conda
conda install -y -c conda-forge awscli lxml nilearn nibabel
conda install -y -c conda-forge awscli lxml nilearn nibabel statsmodels
pip install pybids
```
7. Close the terminal, click on the play button again and open **Jupyter Notebook**
Expand All @@ -55,7 +55,7 @@ cd SDC-BIDS-sMRI
conda create -p ./SDC_sMRI_workshop_2021
source activate $(pwd)/SDC_sMRI_workshop_2021
conda install numpy pandas scipy scikit-learn matplotlib seaborn jupyter ipykernel nb_conda
conda install -c conda-forge awscli nibabel nilearn lxml
conda install -c conda-forge awscli nibabel nilearn lxml statsmodels
pip install pybids
```

Expand Down