Merge pull request #32 from nikhil153/gh-pages

fixed episode names in headers
carpentries-incubator · May 25, 2021 · ffa5ff5 · ffa5ff5
2 parents 1b81a38 + 1be2835
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diff --git a/README.md b/README.md
@@ -31,7 +31,7 @@ The primary goals of this workshop are:
 | ---  | ---     | ---                  |
 ||Setup|Download files required for the lesson|
 | 00:00 | 1. sMRI Modalities | How is MR image acquired? What anatomical features do different modalities capture?  |
-| 00:30 | 2. sMRI Image Clean-up | How do we remove intensity artifacts and extract brains? |
+| 00:30 | 2. sMRI Clean-up | How do we remove intensity artifacts and extract brains? |
 | 01:15 | 3. sMRI Spatial Normalization | What are "coordinate spaces", "templates", "atlases"? What is image registration? |
 | 02:00 | 4. sMRI Quantification | How do we delineate brain anatomy and quantify phenotypes? |
 | 02:45 | 5. sMRI Quality-control | How do we identify image preprocessing failures? |

diff --git a/_episodes/01-Image_Modalities.md b/_episodes/01-Image_Modalities.md
@@ -1,5 +1,5 @@
 ---
-title: "Introduction to structural MR image modalities"
+title: "sMRI modalities"
 teaching: 20
 exercises: 10
 questions:

diff --git a/_episodes/02-Image_Cleanup.md b/_episodes/02-Image_Cleanup.md
@@ -1,7 +1,7 @@
 ---
-title: "Image preprocessing with smriprep (Part 1: image clean-up)"
-teaching: 20
-exercises: 10
+title: "sMRI Clean-up"
+teaching: 30
+exercises: 15
 questions:
 - "What are the sources of noise and artifacts in MR images?"
 - "How do we extract/mask the brain?"

diff --git a/_episodes/03-Image_Spatial_Normalization.md b/_episodes/03-Image_Spatial_Normalization.md
@@ -1,7 +1,7 @@
 ---
-title: "Image preprocessing with smriprep (Part 2: spatial normalization)"
-teaching: 20
-exercises: 10
+title: "sMRI Spatial Normalization"
+teaching: 30
+exercises: 15
 questions:
 - "What are reference coordinate systems"
 - "What are 'templates', 'atlases'?"

diff --git a/_episodes/04-Image_Quantification.md b/_episodes/04-Image_Quantification.md
@@ -1,7 +1,7 @@
 ---
-title: "Image segmentation and quantification"
+title: "sMRI Segmentation and Quantification"
 teaching: 30
-exercises: 10
+exercises: 15
 questions:
 - "How do we delineate brain anatomy and quantify phenotypes?"
 - "How to segment pathologies such as white-matter hyper-intensities?"

diff --git a/_episodes/05-Image_QC.md b/_episodes/05-Image_QC.md
@@ -1,5 +1,5 @@
 ---
-title: "Image quality control"
+title: "sMRI Quality Control"
 teaching: 20
 exercises: 10
 questions:

diff --git a/_episodes/06-Statistical_Analysis.md b/_episodes/06-Statistical_Analysis.md
@@ -1,7 +1,7 @@
 ---
-title: "Statistical analysis"
-teaching: 20
-exercises: 10
+title: "sMRI Statistical Analysis"
+teaching: 30
+exercises: 15
 questions:
 - "How to look at group differences in regional anatomical features?"
 objectives:

diff --git a/_episodes/07-Reproducibility.md b/_episodes/07-Reproducibility.md
@@ -1,5 +1,5 @@
 ---
-title: "Reproducibility considerations"
+title: "sMRI Analysis: Reproducibility Considerations"
 teaching: 20
 exercises: 10
 questions: